PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177926.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 373aa MW: 41042 Da PI: 5.7909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177926.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.8	2.2e-09	246	294	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+++ ++rrRR ri ++ e L+ellP++ + Ka++L +++Ik+Lq XP_027177926.1 246 RQKAATADRRRRLRISEGVEALQELLPHP-----REGGKASVLDDIIDHIKYLQ 294 899999********************8.....5677999**********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MYYSEILNGL SHWRQQHHQT NPIAFHSSLQ SVARVFWPSP LTSLPHLPLC VLLDSTIRIP 60 ISWDSLLLLQ VSGIFFLGLE TMEDESNCNA FPFTTTTLAF GGRGSSSSNN HNVYYMQEEA 120 DHSHYLNFAA AAAASNDTTP HHAPTTLPSW LCCQPTPQNY VHFLAENGAS QVHNEILPFN 180 NSPGSSGFTT PEASFDMVGY KRPHTEGVPP SNLTVLGFQI PSQNSNESYG TAATGSPSTV 240 PSSTSRQKAA TADRRRRLRI SEGVEALQEL LPHPREGGKA SVLDDIIDHI KYLQFQVKEL 300 SQSRLGGESS STPFILLEGY GHFLLRDQMQ NEPLEEMMGR LLEVNPLAAT QLLESGGLIV 360 MPMSLAEGLR PQN

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MYYSEILNGL SHWRQQHHQT NPIAFHSSLQ SVARVFWPSP LTSLPHLPLC VLLDSTIRIP  60
ISWDSLLLLQ VSGIFFLGLE TMEDESNCNA FPFTTTTLAF GGRGSSSSNN HNVYYMQEEA  120
DHSHYLNFAA AAAASNDTTP HHAPTTLPSW LCCQPTPQNY VHFLAENGAS QVHNEILPFN  180
NSPGSSGFTT PEASFDMVGY KRPHTEGVPP SNLTVLGFQI PSQNSNESYG TAATGSPSTV  240
PSSTSRQKAA TADRRRRLRI SEGVEALQEL LPHPREGGKA SVLDDIIDHI KYLQFQVKEL  300
SQSRLGGESS STPFILLEGY GHFLLRDQMQ NEPLEEMMGR LLEVNPLAAT QLLESGGLIV  360
MPMSLAEGLR PQN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	3e-21	bHLH family protein