PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177607.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 349aa MW: 38632.6 Da PI: 7.6862

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177607.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.7	7.4e-12	157	202	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h +Er+RR+++ + f L ++P++ +Kl+Ka++L Ave+Ik+L XP_027177607.1 157 DHLLAERKRRKNLSKHFIALSAIVPHL-----EKLDKASVLVGAVEHIKKL 202 68899*******************9.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MDVPALNHRW PMMNSIEESA TDNTSFDLSS SSDHGSYPNH PSSGKRKLPH DVSQINSISL 60 KPPVQLNNNG MNSKFIGTSP KPSSSPSTRM ISFGTVNYNL PNYSVKTESE DMMPIGNIGF 120 SSSISPTSFD QESYRALEHG TDPFKRGFSR THLQAQDHLL AERKRRKNLS KHFIALSAIV 180 PHLEKLDKAS VLVGAVEHIK KLDKRVKFFE EEEKKRKQRE ELVVSAMKKS RPICSTATND 240 DASSSGEKTS DDSSCDQLSS SAVEVQVKSS GVDMLIKIEC KNHEEILLEF GSLMNKIQLT 300 IKSSSFLQFG DGMLSIGAVA QVNEEFCMTA EVLANKIRQA LANLYDGRS

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MDVPALNHRW PMMNSIEESA TDNTSFDLSS SSDHGSYPNH PSSGKRKLPH DVSQINSISL  60
KPPVQLNNNG MNSKFIGTSP KPSSSPSTRM ISFGTVNYNL PNYSVKTESE DMMPIGNIGF  120
SSSISPTSFD QESYRALEHG TDPFKRGFSR THLQAQDHLL AERKRRKNLS KHFIALSAIV  180
PHLEKLDKAS VLVGAVEHIK KLDKRVKFFE EEEKKRKQRE ELVVSAMKKS RPICSTATND  240
DASSSGEKTS DDSSCDQLSS SAVEVQVKSS GVDMLIKIEC KNHEEILLEF GSLMNKIQLT  300
IKSSSFLQFG DGMLSIGAVA QVNEEFCMTA EVLANKIRQA LANLYDGRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	204	RKRRKNLSKHFIALSAIVPHLEKLDKASVLVGAVEHIKKLDK
2	164	205	RKRRKNLSKHFIALSAIVPHLEKLDKASVLVGAVEHIKKLDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-22	bHLH family protein