PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177405.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

M-type_MADS

Protein Properties

Length: 336aa MW: 38397.5 Da PI: 8.2894

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177405.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	32.5	1.1e-10	11	49	3	41
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 i nks+r+ t+ k r ++ K + LS+LCd+ev vi+ XP_027177405.1 11 IPNKSQRKATLKKCRDCLFRKEKQLSTLCDVEVGVIVQD 49 88**********************************965 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MTRKKRKYVA IPNKSQRKAT LKKCRDCLFR KEKQLSTLCD VEVGVIVQDQ EKKDVFVWPS 60 HHEVEEKLMR FLNVPDIDRS RKFSTHESFL TGTVSKIVDH TRKAHEKNDK KEREYLTHKL 120 MKGKITINEL DMMQTNGLIQ LMLDKMNQCN RRIAQLDMLE EQENQSLSTA NQHLPSLVQM 180 RGQNKAGGVW RSGVNAIFPA PELIESYKND QRFSGYNSNV IIPDKSQICD FKNDQMFFDS 240 QTNAYIPNPK LIEDLKYDNW LREAMFNKPS NTFPSCASDI GFHHTNACSN EGNNMVNHNT 300 AGSSSGGNHM DITPPNVADP SFGTNDGFPE IIVVSP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	3	33	RKKRKYVAIPNKSQRKATLKKCRDCLFRKEK
2	4	34	RKKRKYVAIPNKSQRKATLKKCRDCLFRKEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	5e-15	M-type_MADS family protein