PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177224.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

WRKY

Protein Properties

Length: 514aa MW: 55597.3 Da PI: 6.6429

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	80.1	2.4e-25	208	263	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 DgynWrKYGqK+vk+ + +rsYYrCt+++C++kk +e+s++ ++v+ei+Y+++Hnh+ XP_027177224.1 208 DGYNWRKYGQKQVKSPQGSRSYYRCTYSECCAKK-IECSDDSNRVMEIVYRSHHNHD 263 9*****************************98.*******************7 PP
2	WRKY	79.4	4e-25	380	433	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 Dgy+WrKYGqK+vkg+++pr CtsagCpv+k++er+++++++v+itY+g H+h+ XP_027177224.1 380 ADGYRWRKYGQKMVKGNPHPR----CTSAGCPVRKHIERAKDNTNAVIITYKGVHDHD 433 6*****************6....******************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MDAKNFNSDN NSSNKSPSCE GEDEAAAQNS KSREEFDENS RGGGGGDGYE QVNSKTVDNS 60 SIPVVVAQMS NNRASSTPET LATAASSDLH CKFEVAVDNE MQRLEPAEEL KDQVGMSYQE 120 EFRIIADQAV PDQTQNQQEP PNGPRSSEPS PTSVTQPISS VPSPTLPEQK MSPGDNRNTS 180 HTSEADKKNS FDPKTLSVVS IQKTPSPDGY NWRKYGQKQV KSPQGSRSYY RCTYSECCAK 240 KIECSDDSNR VMEIVYRSHH NHDPPQKVNC TRGSRHSLSI APANGSDSSV APIGATADSA 300 PSTSSKDSVQ ETVSVPDPIQ KDSSDSDDNA ETNIKQERED EPEPSKRLKK TVASCSAPLL 360 KPGKKPKIVV HAASDVGISA DGYRWRKYGQ KMVKGNPHPR CTSAGCPVRK HIERAKDNTN 420 AVIITYKGVH DHDMPVPKKR HGPPSAPLVA AAAPASMSTV QVVKSETIQN QVSATQWSVD 480 KEGGLKGQTL ECGGEKNVES ARTLLSIGFE IKPC

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MDAKNFNSDN NSSNKSPSCE GEDEAAAQNS KSREEFDENS RGGGGGDGYE QVNSKTVDNS  60
SIPVVVAQMS NNRASSTPET LATAASSDLH CKFEVAVDNE MQRLEPAEEL KDQVGMSYQE  120
EFRIIADQAV PDQTQNQQEP PNGPRSSEPS PTSVTQPISS VPSPTLPEQK MSPGDNRNTS  180
HTSEADKKNS FDPKTLSVVS IQKTPSPDGY NWRKYGQKQV KSPQGSRSYY RCTYSECCAK  240
KIECSDDSNR VMEIVYRSHH NHDPPQKVNC TRGSRHSLSI APANGSDSSV APIGATADSA  300
PSTSSKDSVQ ETVSVPDPIQ KDSSDSDDNA ETNIKQERED EPEPSKRLKK TVASCSAPLL  360
KPGKKPKIVV HAASDVGISA DGYRWRKYGQ KMVKGNPHPR CTSAGCPVRK HIERAKDNTN  420
AVIITYKGVH DHDMPVPKKR HGPPSAPLVA AAAPASMSTV QVVKSETIQN QVSATQWSVD  480
KEGGLKGQTL ECGGEKNVES ARTLLSIGFE IKPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30935.1	1e-108	WRKY family protein