PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027177203.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 342aa    MW: 37665.6 Da    PI: 6.7912
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027177203.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.91.5e-32186242158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++k+  k+rkpylheSRh+hA++R RgsgGrF
  XP_027177203.1 186 DGPIYVNAKQYHGILRRRQVRAKLEAQNKM-VKGRKPYLHESRHQHAMNRVRGSGGRF 242
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    
MAIRVENIHS KVLGQDSTCS MLHFVSSPWW NLQEQQLSQT SSKNLSLRVE TPSLCFEEAK  60
HLGQQIEEDQ SSHSMESSSQ SQRGATTMGK SNSQDQCISS ESAQNESFGT HVEEQPKPAF  120
FPSNLESSAN PSQIEFPQSA AQIPCIYSDS YFSSLYSAYG PQAMIQPQMM GIAPARVPLP  180
PDLAQDGPIY VNAKQYHGIL RRRQVRAKLE AQNKMVKGRK PYLHESRHQH AMNRVRGSGG  240
RFLSTKKQQQ QSESTLSTGS FSASIHSCQE TDALEMEAER SNDSRHYAST STSSSAMGYT  300
PDDIIFQQHA DSYISLSGQI AGSTSSGGFM QNGTPLPVPT TR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.17e-37NF-YA family protein