PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177159.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 735aa MW: 82296.5 Da PI: 4.6879

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177159.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	55.6	1.1e-17	566	613	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ + +++dAAk++ v+ ++LKriCR +GI+RWP Rk +++ XP_027177159.1 566 ITREVLEQNSARKLEDAAKNIRVSRSTLKRICRDFGINRWPPRKARKV 613 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence
MAIEGHAPFS TEGLGPCELS CSRSTYHSPD LLKQLWVFWS RCGDDEGRCG KSHHLSATAD 60 GAMIKNQIKR FLELLLDPLL PEWWRCLVQF WGLVKIGDKT YLTTCDQPFA LQYSSHLEVK 120 KLCEYRKHCL EYLIPVDDDD DDDDDVQLIG PPGRVFCSGL PEYALDVRDY TSREYLQRDY 180 AVDCVEQYWA LPIYHAPGHV PIGVLEIVSP HNSYIPQHWV LEKLQNLPRD LNLTTTCVSL 240 LAEVNSCQDG EIAQIGKALL GASATHQLDD TETWTSSGEI LSSHYGVDFI RKGQGVVGRA 300 FSSKSACFCR DVRQLSITEY PVVHTARSCE YSACFAVCLQ SSCSNNCIYV LEFFLPTDEE 360 DYGDPRTLLR SLMELLKERL GSSFKIASGQ ELGQKLTVEV IKVSPGNEFD SFEICNTTGM 420 ESTPRLGEVQ GGGGGEGMTQ VDFSSQQVDA ANAYINGVHG QQSGIVGSPP RSERAQGFVD 480 ISYLELNLAG VDVAHNSMDG VYEQQAGIDR SSTGQEVVQN MVSIAHDEPI VEDPERDDAS 540 IEESGDEVTN LKMKEPSCIL KCNLGITREV LEQNSARKLE DAAKNIRVSR STLKRICRDF 600 GINRWPPRKA RKVSQALAVQ KTVQPSTEDT HEQHRSDATR VEDDNGMWVK AEYQGRMIKF 660 RLPFSARKID LEENVVQRLN VALGSFIIEY QDEDSDRIWI TCDEVLRTAM STLSSLDRTT 720 IKMYIVEDSP SKRDQ

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence

MAIEGHAPFS TEGLGPCELS CSRSTYHSPD LLKQLWVFWS RCGDDEGRCG KSHHLSATAD  60
GAMIKNQIKR FLELLLDPLL PEWWRCLVQF WGLVKIGDKT YLTTCDQPFA LQYSSHLEVK  120
KLCEYRKHCL EYLIPVDDDD DDDDDVQLIG PPGRVFCSGL PEYALDVRDY TSREYLQRDY  180
AVDCVEQYWA LPIYHAPGHV PIGVLEIVSP HNSYIPQHWV LEKLQNLPRD LNLTTTCVSL  240
LAEVNSCQDG EIAQIGKALL GASATHQLDD TETWTSSGEI LSSHYGVDFI RKGQGVVGRA  300
FSSKSACFCR DVRQLSITEY PVVHTARSCE YSACFAVCLQ SSCSNNCIYV LEFFLPTDEE  360
DYGDPRTLLR SLMELLKERL GSSFKIASGQ ELGQKLTVEV IKVSPGNEFD SFEICNTTGM  420
ESTPRLGEVQ GGGGGEGMTQ VDFSSQQVDA ANAYINGVHG QQSGIVGSPP RSERAQGFVD  480
ISYLELNLAG VDVAHNSMDG VYEQQAGIDR SSTGQEVVQN MVSIAHDEPI VEDPERDDAS  540
IEESGDEVTN LKMKEPSCIL KCNLGITREV LEQNSARKLE DAAKNIRVSR STLKRICRDF  600
GINRWPPRKA RKVSQALAVQ KTVQPSTEDT HEQHRSDATR VEDDNGMWVK AEYQGRMIKF  660
RLPFSARKID LEENVVQRLN VALGSFIIEY QDEDSDRIWI TCDEVLRTAM STLSSLDRTT  720
IKMYIVEDSP SKRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-37	Nin-like family protein