PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027177158.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 763aa MW: 86325.7 Da PI: 5.0759

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027177158.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	59.3	7.1e-19	602	649	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP Rk +++ XP_027177158.1 602 ITHEVLEQNSMRKLEDAAKNIGVSRSTLKRICREYGIHRWPPRKERKV 649 899*****************************************7775 PP

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence
MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KPHHLSAAAD 60 AAVIKTDIKW FMQLDTETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC YYFDPDVKPL 120 CEYRKLCLEC LIPVDDDDDD DDDDDDDELI IGPPGRVFRS GIPEHAEDVH DYTSREYPQR 180 DYAVDRARYY WALPIYHPTR HLPVGVLEIV SPYVVGDLPR RQVLEKLQKV NLTTTCVRLA 240 EASSCQDGEI AKIDKALRNT KSIFKRPKHG LYYPETWTTS GEILSSREGV DFIRKGQGVV 300 GRAFSSKSAC FCRDIRQLSI TDYPLLLKAR FLGYSSCFAV CLQSSCSNNC IYVLEFFLPT 360 NEKDYGDCRI MLNSIMEKLK KYLRSSFKIA LGQELGQKLT VEVIKVTPED EFDSFEICST 420 AGIESTPRLG KVQGGEGMMQ LDFSSQQVDA ANGSMNGGVE STPRLAKAHG GEGMMQVDFS 480 SQQVDAANGY IKGVHGQQSG IVRSPPRPEH AQDFVNISYQ ELNLAGVDVA HNSMNGIYEQ 540 QDGIVRSSIG QVLMQNMVSI ADYEPIVEDP ERDDASIEQS GNEVTNLKMQ EPSCTLKSDL 600 GITHEVLEQN SMRKLEDAAK NIGVSRSTLK RICREYGIHR WPPRKERKVN QVFAKQKVVQ 660 PAIENVEEHH WLDATRLEDD SSMWMIKAKY QEDKIKFELS SSARKIDLEN NIAQRFNLSG 720 GSFKIMYQDE LNDWILITCD TDLSFCMKTL HKLGRTTIEV LVS

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence

MAMEAQTFPS PPFSTEGLGP CELSYSHSFN NSFHQWTFWS TCGNDEGRCG KPHHLSAAAD  60
AAVIKTDIKW FMQLDTETIM WWRCLVQFWG LVRIGDKTYL TTCDQPFALC YYFDPDVKPL  120
CEYRKLCLEC LIPVDDDDDD DDDDDDDELI IGPPGRVFRS GIPEHAEDVH DYTSREYPQR  180
DYAVDRARYY WALPIYHPTR HLPVGVLEIV SPYVVGDLPR RQVLEKLQKV NLTTTCVRLA  240
EASSCQDGEI AKIDKALRNT KSIFKRPKHG LYYPETWTTS GEILSSREGV DFIRKGQGVV  300
GRAFSSKSAC FCRDIRQLSI TDYPLLLKAR FLGYSSCFAV CLQSSCSNNC IYVLEFFLPT  360
NEKDYGDCRI MLNSIMEKLK KYLRSSFKIA LGQELGQKLT VEVIKVTPED EFDSFEICST  420
AGIESTPRLG KVQGGEGMMQ LDFSSQQVDA ANGSMNGGVE STPRLAKAHG GEGMMQVDFS  480
SQQVDAANGY IKGVHGQQSG IVRSPPRPEH AQDFVNISYQ ELNLAGVDVA HNSMNGIYEQ  540
QDGIVRSSIG QVLMQNMVSI ADYEPIVEDP ERDDASIEQS GNEVTNLKMQ EPSCTLKSDL  600
GITHEVLEQN SMRKLEDAAK NIGVSRSTLK RICREYGIHR WPPRKERKVN QVFAKQKVVQ  660
PAIENVEEHH WLDATRLEDD SSMWMIKAKY QEDKIKFELS SSARKIDLEN NIAQRFNLSG  720
GSFKIMYQDE LNDWILITCD TDLSFCMKTL HKLGRTTIEV LVS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	4e-36	Nin-like family protein