PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027177082.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 395aa    MW: 43847.1 Da    PI: 6.7245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027177082.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-08150170526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f++ G Ck Gd C FaHg
  XP_027177082.1 150 ACPDFRK-GSCKKGDACEFAHG 170
                     7******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MMIGERNHPN PVVHVPPWPA SFTDDQTADV SMTLSPNANA HSSPSFDDYS FCLQNDALAA  60
LQRFLPSNLK TNLTDLVLED LDAAENDDGF GKDLDLPVDA YSCDHFRMFE FKVRKCMRGR  120
SHDWTECPYA HPGEKARRRD PRKYHYSGTA CPDFRKGSCK KGDACEFAHG VFECWLHPAR  180
YRTQPCKDGL NCKRRVCFFA HSPEQLRVLS PRADSYDGSP HRLALEGSFG KALQFMSSPE  240
SGSPPSESPP MSPMTTSTSM SSLSRSLGSN SVSEIMASLR QLQLNKVQSV PSSWALQAGG  300
SGSGTPRVVM TRPGSYSLPS TPTRTVARNG MRYFDNWDKG GGEEEPMMER VESGRDLRAK  360
IFQKLSKENP LDWVDPSPSD APPNPDVGWV SDLIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-108C3H family protein