PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027177039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Nin-like | ||||||||
Protein Properties | Length: 233aa MW: 27048.3 Da PI: 6.2656 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 59.3 | 7.5e-19 | 63 | 111 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGI+RWP k +++ XP_027177039.1 63 RITREVLEQNSRRKLEDAAKNIGVSRSTLKRICREYGIHRWPPHKARKV 111 799***************************************9887775 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MNGIYEQEDG IVRSSTGEEL VQNMVSVAHD EPERDGASID QRDNEMISIK MQKSSCTLKS 60 DLRITREVLE QNSRRKLEDA AKNIGVSRST LKRICREYGI HRWPPHKARK VNQAFAEQKI 120 VQPSTEDTHE HHQSNATRLE DDNGMWVKAE YQGFMIKFRL PFSARKIDLE EKVAQRLNLA 180 VGSFKIEYQD EDDDRIRITC DEDLRTFMSS LSSLGRTTIK MYIVEDNPNR RDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 6e-14 | Nin-like family protein |