PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027176856.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 347aa MW: 38263 Da PI: 9.2955 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.2 | 6e-18 | 184 | 238 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_027176856.1 184 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 238 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 128 | 4.1e-41 | 184 | 274 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rl+keq+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk XP_027176856.1 184 RKKLRLTKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-ALK 274 69*************************************************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence |
MELALSLGDT PKPFTFLDKA QKMVNRDLGF CMGLGKGAAD RGGDHQSRNS RESDGERRGS 60 SDPPVQLDLL PFSPVPRSQT SSSQLSFSWL TQHLTVAAEP GSSNGFTRAV DVNRRSLGVD 120 KGGEEGTTAL SSPNSAASSF QMDFSIYRSG SRSNKRSENE AENDIRGGMA SSRASDEDEN 180 GMARKKLRLT KEQSAFLEES FKEHNTLNPK QKLALAKQLN LRPRQVEVWF QNRRARTKLK 240 QTEVDCEYLK RCCETLTEEN RRLQKELQEL RALKSSQPFY MQLPATTLTM CPSCERVAST 300 STANTNVTSP PAATADIANT TLSLAKPRLT QMVPFPPLQV QGPQAAL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 241 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-70 | HD-ZIP family protein |