PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176744.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 560aa MW: 62001.1 Da PI: 7.1796

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176744.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	70	116	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l++av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l XP_027176744.1 70 KGGWTPEEDDTLKRAVAAFKGKCWKKIAEFFP-DRSEVQCLHRWQKVL 116 688***************************.**********986 PP
2	Myb_DNA-binding	64.1	2.8e-20	122	168	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde++v++v+++G+ W+ Ia+ ++ gR +kqc++rw+++l XP_027176744.1 122 KGPWTQEEDEKIVELVAKYGPTKWSVIAKSLP-GRIGKQCRERWHNHL 168 79****************************.***********97 PP
3	Myb_DNA-binding	48.2	2.4e-15	174	217	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++W eE++ l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++ XP_027176744.1 174 KDAWALEEELALMNAHRVHGNK-WAEIAKVLP-GRTDNAIKNHWNS 217 679*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 560 aa Download sequence
MLGSGGDDLK EMTEVKTEGY CLENKQSAAA SSSSVSETSG SVTLKSPGIG SPTATSPSHR 60 RTTGPIRRAK GGWTPEEDDT LKRAVAAFKG KCWKKIAEFF PDRSEVQCLH RWQKVLNPEL 120 VKGPWTQEED EKIVELVAKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP GIKKDAWALE 180 EELALMNAHR VHGNKWAEIA KVLPGRTDNA IKNHWNSSLK KKLDFYLATG NLPPVAKNGL 240 QNGSTDISGL SSANVIGRSH NGSDAIALAS SEITDGHKVE VVGKDQEDIA SSVPDIGAST 300 SVFHNNSTDS EVVRYEEESF QINPGQIDPN IDAMFDKSRT SDEIYQYRVI ETPMSSQIPE 360 YGTLYYEPPL LENYVPLDSD LQNGHQYSES SPKLSPIGIF TPPSVSSGSL YLQTPESILK 420 IAAQSFPNTP SILRKRKTEH HLSTPSHKVG KDEESIKDRL LVSDESKQNS TFQRSELQDR 480 SFHESSHNDT NGHCNAKSFN ASPPYRLRSK RTTVLKSVEK QLKFVFNEEQ CDNNTNHHSP 540 TIKEVSPAKN NLETAKTGVT

Sequence ? help Back to Top

Protein Sequence Length: 560 aa Download sequence

MLGSGGDDLK EMTEVKTEGY CLENKQSAAA SSSSVSETSG SVTLKSPGIG SPTATSPSHR  60
RTTGPIRRAK GGWTPEEDDT LKRAVAAFKG KCWKKIAEFF PDRSEVQCLH RWQKVLNPEL  120
VKGPWTQEED EKIVELVAKY GPTKWSVIAK SLPGRIGKQC RERWHNHLNP GIKKDAWALE  180
EELALMNAHR VHGNKWAEIA KVLPGRTDNA IKNHWNSSLK KKLDFYLATG NLPPVAKNGL  240
QNGSTDISGL SSANVIGRSH NGSDAIALAS SEITDGHKVE VVGKDQEDIA SSVPDIGAST  300
SVFHNNSTDS EVVRYEEESF QINPGQIDPN IDAMFDKSRT SDEIYQYRVI ETPMSSQIPE  360
YGTLYYEPPL LENYVPLDSD LQNGHQYSES SPKLSPIGIF TPPSVSSGSL YLQTPESILK  420
IAAQSFPNTP SILRKRKTEH HLSTPSHKVG KDEESIKDRL LVSDESKQNS TFQRSELQDR  480
SFHESSHNDT NGHCNAKSFN ASPPYRLRSK RTTVLKSVEK QLKFVFNEEQ CDNNTNHHSP  540
TIKEVSPAKN NLETAKTGVT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-158	MYB family protein