PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176575.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 703aa MW: 77172.4 Da PI: 5.9855

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176575.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.8	7.6e-08	280	300	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++Gd C +aHg XP_027176575.1 280 PCPDFRK-GTCRRGDMCEYAHG 300 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 703 aa Download sequence
MDMNHLTVET EDVLASVLEL AANNDMDGFK RWVEPDPTSV DEVGLWYGRQ KGSKQMVLEE 60 RTPLMVAATY GSIDVLELIL SLPEIDVNRS CGLDKSTALH CAASGGSIKA VDAVKLLLAA 120 GADPNLMDIN GHRPIDVIIV CPKFQERKLL LEKLLSTEAS LGDHRLRVST TTSNSNSNSP 180 PLSPSPGNGS PSSHSDSTSS PKISDLPASS MSEKKEYPVD PSLPDIKNSI YSTDEFRMYS 240 FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGTCR RGDMCEYAHG 300 VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTQEEMRPLY VSTGSAVPSP RTGPSSTNAV 360 DFAGMNFLPG SPSSVTMMSP SPFTPPMSPS TNGIANMGWA QPNAPALHLP GSNLQSSRLR 420 SSFNARDIPT EDLNMLSEFD VQQQQFLDEI SRISQPNINS SSLNRTSRPK TMTPSNLEDL 480 FNVEGLSPRY SDQALASAVF SPTHKSAVLN QFQQQQQSML SPINTNFSPK SVDHSLLQAS 540 FGVSSSGRMS PRSMDPISPM SSRVSMLAQR EQQQQQQPQQ QFRSLSSRDL GSSSAAVVGS 600 PADTWSNWGS SMGKPDWAVS TEFGRLKRSS SFELGNEEPD LSWVQSLVRD SPQEMKEKSV 660 QYVAGAATSA EGANLDHQID QMDPSALTAL LDQMQLDHLI AQG

Sequence ? help Back to Top

Protein Sequence Length: 703 aa Download sequence

MDMNHLTVET EDVLASVLEL AANNDMDGFK RWVEPDPTSV DEVGLWYGRQ KGSKQMVLEE  60
RTPLMVAATY GSIDVLELIL SLPEIDVNRS CGLDKSTALH CAASGGSIKA VDAVKLLLAA  120
GADPNLMDIN GHRPIDVIIV CPKFQERKLL LEKLLSTEAS LGDHRLRVST TTSNSNSNSP  180
PLSPSPGNGS PSSHSDSTSS PKISDLPASS MSEKKEYPVD PSLPDIKNSI YSTDEFRMYS  240
FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGTCR RGDMCEYAHG  300
VFECWLHPAQ YRTRLCKDGT SCNRRVCFFA HTQEEMRPLY VSTGSAVPSP RTGPSSTNAV  360
DFAGMNFLPG SPSSVTMMSP SPFTPPMSPS TNGIANMGWA QPNAPALHLP GSNLQSSRLR  420
SSFNARDIPT EDLNMLSEFD VQQQQFLDEI SRISQPNINS SSLNRTSRPK TMTPSNLEDL  480
FNVEGLSPRY SDQALASAVF SPTHKSAVLN QFQQQQQSML SPINTNFSPK SVDHSLLQAS  540
FGVSSSGRMS PRSMDPISPM SSRVSMLAQR EQQQQQQPQQ QFRSLSSRDL GSSSAAVVGS  600
PADTWSNWGS SMGKPDWAVS TEFGRLKRSS SFELGNEEPD LSWVQSLVRD SPQEMKEKSV  660
QYVAGAATSA EGANLDHQID QMDPSALTAL LDQMQLDHLI AQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein