PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027176403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 479aa MW: 54412.6 Da PI: 6.4743 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 76.5 | 4.2e-24 | 111 | 211 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_027176403.1 111 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 205 7**************999999964336777789999999**********************************************55******** PP trihelix 81 yfdqle 86 ++d ++ XP_027176403.1 206 LLDTMD 211 ***998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 479 aa Download sequence |
MLGLEISLHH QLPQGQTTQN PHHMQPQPPQ QQLQPPPPPS HHPMVVFGHH EADQHHHPQH 60 AQLSSKQAYP FSAKAKNQAL APSDDDEPGL GTENSADTDG MRKISPWQRM KWTDNMVRLL 120 IMVVFYIGDE VGSEGNDPAG KKKGAGGVLQ KKGKWKSVSR AMMERGFFVS PQQCEDKFND 180 LNKRYKRVND ILGKGTACRV VENQSLLDTM DHLSAKMKEE VKKLLSSKHL FFREMCAYHN 240 SCGHGGTGGA SSSGAAQQST EVGGVEPSSQ MQQQQRCLHT SENASTPPNL ARCEVEGSKT 300 TKGRSFEEDN DEDDDDDDEY EDDVVEGGAS GYEHGHPEED DDTPDERCSR KRQRKGIFLP 360 PLVQQMSTEL MKVLQDESKN SAEKRQWIKN RLLQLEERHV GFQSEAFELE KQRLKWVKFS 420 SKKEREMERD KLSNDRLRLE NERMMLLIRQ KELELLDVYQ QQQQQHQSSR KSDPSSITG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10040.1 | 2e-75 | Trihelix family protein |