PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027176402.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Trihelix

Protein Properties

Length: 487aa MW: 55240.6 Da PI: 6.4743

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027176402.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.5	4.3e-24	119	219	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ +++++++ + XP_027176402.1 119 KWTDNMVRLLIMVVFYIGDEVGSEGndpagkkkgaggvlQKKGKWKSVSRAMMERGFFVSPQQCEDKFNDLNKRYKRVNDILGKGtACRVVENQS 213 7************999999964336777789999999******************************************55**** PP trihelix 81 yfdqle 86 ++d ++ XP_027176402.1 214 LLDTMD 219 *998 PP

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence
MYSNMGSGML GLEISLHHQL PQGQTTQNPH HMQPQPPQQQ LQPPPPPSHH PMVVFGHHEA 60 DQHHHPQHAQ LSSKQAYPFS AKAKNQALAP SDDDEPGLGT ENSADTDGMR KISPWQRMKW 120 TDNMVRLLIM VVFYIGDEVG SEGNDPAGKK KGAGGVLQKK GKWKSVSRAM MERGFFVSPQ 180 QCEDKFNDLN KRYKRVNDIL GKGTACRVVE NQSLLDTMDH LSAKMKEEVK KLLSSKHLFF 240 REMCAYHNSC GHGGTGGASS SGAAQQSTEV GGVEPSSQMQ QQQRCLHTSE NASTPPNLAR 300 CEVEGSKTTK GRSFEEDNDE DDDDDDEYED DVVEGGASGY EHGHPEEDDD TPDERCSRKR 360 QRKGIFLPPL VQQMSTELMK VLQDESKNSA EKRQWIKNRL LQLEERHVGF QSEAFELEKQ 420 RLKWVKFSSK KEREMERDKL SNDRLRLENE RMMLLIRQKE LELLDVYQQQ QQQHQSSRKS 480 DPSSITG

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence

MYSNMGSGML GLEISLHHQL PQGQTTQNPH HMQPQPPQQQ LQPPPPPSHH PMVVFGHHEA  60
DQHHHPQHAQ LSSKQAYPFS AKAKNQALAP SDDDEPGLGT ENSADTDGMR KISPWQRMKW  120
TDNMVRLLIM VVFYIGDEVG SEGNDPAGKK KGAGGVLQKK GKWKSVSRAM MERGFFVSPQ  180
QCEDKFNDLN KRYKRVNDIL GKGTACRVVE NQSLLDTMDH LSAKMKEEVK KLLSSKHLFF  240
REMCAYHNSC GHGGTGGASS SGAAQQSTEV GGVEPSSQMQ QQQRCLHTSE NASTPPNLAR  300
CEVEGSKTTK GRSFEEDNDE DDDDDDEYED DVVEGGASGY EHGHPEEDDD TPDERCSRKR  360
QRKGIFLPPL VQQMSTELMK VLQDESKNSA EKRQWIKNRL LQLEERHVGF QSEAFELEKQ  420
RLKWVKFSSK KEREMERDKL SNDRLRLENE RMMLLIRQKE LELLDVYQQQ QQQHQSSRKS  480
DPSSITG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	3e-75	Trihelix family protein