PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027176371.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 170aa    MW: 19473.9 Da    PI: 9.9943
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027176371.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.35.2e-334096158
       CBFB_NFYA  1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
                    +ep+YVNaKQy++Il+RRq Rak+e e+k+ +k+rkpylheSRh hA+rR+Rg+gGrF
  XP_027176371.1 40 EEPVYVNAKQYHGILRRRQLRAKAELENKV-AKARKPYLHESRHLHAMRRARGCGGRF 96
                    69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    
MHGKSDSGNR FLLSDDSLEV HPDLQSMHDS RLALPLELAE EPVYVNAKQY HGILRRRQLR  60
AKAELENKVA KARKPYLHES RHLHAMRRAR GCGGRFLSKK NVDKSDSRAA SKKSIDFNAT  120
PTEMKDSLGS QHPFSSTSQK SCNEVRGFLL QEMQNTNTFE WGYQYHCKTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.13e-29NF-YA family protein