PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027175530.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 310aa    MW: 33603.9 Da    PI: 8.4274
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027175530.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.4e-145296147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
   XP_027175530.1 52 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 96
                     789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MNSTPTMTTS SSSDPQSMPN SATPTTTATN TDAYGCGSGK KIRKPYTITK SRESWTEEEH  60
DKFLEALQLF DRDWKKIEDF VGSKTVIQIR SHAQKYFLKV QKNGTIAHVP PPRPKRKAAH  120
PYPQKAPKNV LVPVQASIAY PSSVNSLAPG YPTWDDASVI ASAQSSGVLP SQDEYSLHGA  180
EADIGSKGAT RITNSYITGV GSSSKTLPAS ELPKQEKQGS LLHGIPDFAE VYSFIGSVFD  240
PTAEGHVQKL KEMDPINFET VLLLMRNLTI NLSSPDFEPV RTVLSSSDVN TKCMGVAAGN  300
LVKNPAYLPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-118MYB_related family protein