PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175137.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Protein Properties

Length: 799aa MW: 88831.3 Da PI: 7.145

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175137.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	58.1	1.6e-18	206	306	1	99
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f+kvl+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++++ e++ XP_027175137.1 206 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLRIQDVQGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRMD-PEGK 298 99************************555567778***********99899999999.*******************876.8888 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+++++++ XP_027175137.1 299 LLMGFRKA 306 88888765 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW 60 RECTTCGKRL HCGCVASSSW LELLDSGGVN CISCSESHGI CSNLTGEKNK DCRVFSADDG 120 GGKQFTTVGS QSNGSRSRHL LPKPVKSIMA AGLEANVSSL TQLRVARPPV EGRIKNQLLP 180 RYWPRITDQE LRQISGDSNS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG 240 LPLRIQDVQG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLL 300 MGFRKASLMQ TCSDFPSQDN KHLSSIPKGS FSSEPFFLPG ADNLHSANSQ SALLDSVKGS 360 GVFPLSALSK HFSAVEFGWH IAEMNGEKTL DGIFPSSMLV PERKRSRNIG SKSKRLLIDS 420 QDAFELKLSW EELQDMLCPP PCVKPSTVAI EDHEFEEYDQ PPVFGKKSIF TMRQSGEQEQ 480 WAQCDSCLKW RRLPVNVLLP PKWTCQEHTW ALSRPSCSGP EDLSPHELES LLKMSKEHKK 540 QKIASGLKSA HEHESSDPDG LGNSKAVRGD TSGTSAASIA TTTKHPRHRP GCSCIVCIQP 600 PSGKGKHKPT CTCNVCMTVK RRFKTLMMRK KKRQSEREAE IAQRNKFDWV SKEEAEVESY 660 QQLVIPHDSL ENHKRLGSES EFLSQSNKQS EKLEEIGKEQ LDLNCHPDRE NLQQSSSRVS 720 MVSLLQEASL PLQTYLKQNG LTSLVSDQRV SSGSNVLLPQ VTRESEVQFD EDQCLSHEIQ 780 EQEVKEELSE TDQAGNDPS

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

MDSKVCMNQQ CTSSSSSSSI DLKRGWPLRS GGFATLCHHC GIAYEQLVFC DKFHSNDSGW  60
RECTTCGKRL HCGCVASSSW LELLDSGGVN CISCSESHGI CSNLTGEKNK DCRVFSADDG  120
GGKQFTTVGS QSNGSRSRHL LPKPVKSIMA AGLEANVSSL TQLRVARPPV EGRIKNQLLP  180
RYWPRITDQE LRQISGDSNS TVVPLFEKVL SASDAGRIGR LVLPKACAEA YFPPISQPEG  240
LPLRIQDVQG KEWVFQFRFW PNNNSRMYVL EGVTPCIQSM QLQAGDTVTF SRMDPEGKLL  300
MGFRKASLMQ TCSDFPSQDN KHLSSIPKGS FSSEPFFLPG ADNLHSANSQ SALLDSVKGS  360
GVFPLSALSK HFSAVEFGWH IAEMNGEKTL DGIFPSSMLV PERKRSRNIG SKSKRLLIDS  420
QDAFELKLSW EELQDMLCPP PCVKPSTVAI EDHEFEEYDQ PPVFGKKSIF TMRQSGEQEQ  480
WAQCDSCLKW RRLPVNVLLP PKWTCQEHTW ALSRPSCSGP EDLSPHELES LLKMSKEHKK  540
QKIASGLKSA HEHESSDPDG LGNSKAVRGD TSGTSAASIA TTTKHPRHRP GCSCIVCIQP  600
PSGKGKHKPT CTCNVCMTVK RRFKTLMMRK KKRQSEREAE IAQRNKFDWV SKEEAEVESY  660
QQLVIPHDSL ENHKRLGSES EFLSQSNKQS EKLEEIGKEQ LDLNCHPDRE NLQQSSSRVS  720
MVSLLQEASL PLQTYLKQNG LTSLVSDQRV SSGSNVLLPQ VTRESEVQFD EDQCLSHEIQ  780
EQEVKEELSE TDQAGNDPS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	620	631	KRRFKTLMMRKK
2	620	633	KRRFKTLMMRKKKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	B3 family protein