PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027175099.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 1081aa MW: 119993 Da PI: 6.7105

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027175099.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	68.4	1e-21	126	226	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv++++L +gD+v+ ++++ XP_027175099.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQTWTFRHIYRGQPKRHLLTTGWSVFVSSKRLVAGDSVLVI--RDEK 217 99***************************9445444.38******************************************9988..4466 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l++++ r XP_027175099.1 218 SQLLLGIKR 226 667888776 PP
2	Auxin_resp	121.9	4.8e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++g+ dldpvrW+ S+Wr+L+ XP_027175099.1 252 AAHAAANSSPFTIFYNPRASPSEFVIPFAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGIADLDPVRWKSSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence
MKAPTNGYLA NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE 60 TDSIPSYPNL PSKLICLLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQSR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQTWTFRH 180 IYRGQPKRHL LTTGWSVFVS SKRLVAGDSV LVIRDEKSQL LLGIKRANRQ LPALSSSVIS 240 SDSMHIGILA AAAHAAANSS PFTIFYNPRA SPSEFVIPFA KYNKAMYTQV SLGMRFRMMF 300 ETEESGVRRY MGTITGIADL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP 360 FYICPPPFFR PKFPKHPGFP DDESDMESVF KRGMPWLGDD LGLKDATSSV LPGLSLVQWM 420 NMQQNNQLSA AQSGIFPSAL NGNLSTEDHS KLLNFQSPAL AATNLQFGKT NQFNQQTNQL 480 QQTSLVGTQP QQLQQLLHSS VNSQPQQHPQ QHSIQLRQQP QLPQHQQQCP PHLQQPQQLQ 540 QQQNMMPLAC VNNGSSVATS QISNQNLQQP ALYSQLQQQH LLTGNTQPQQ PASSNKSSLT 600 SLPQDVQYQQ LEHQNNLLQK TQQQQTPMLQ APLQTLQQNL IQRQQVQQTS QQNLSEQNLQ 660 LQLLQKLQQQ QQQQQQQLLS PLSNHLEPQL PQQQQPLQQN RPFQQAPVAQ QQPSGNSFST 720 STLLQSPQHP VNQLQGQNKS RIFVKAYSGP TDGDAPSCST SPSTNNCHVS SSKFLNRNQQ 780 GPITQAGESV IDPSPILVHE LQSRSDVRVK HELSGSKGAE QPKFRSNTEH LDAASSATSY 840 CLDTGGIQQN FPLPGLCLDS DVQSHSRSTL PFTSTVDSLA PDALLSRGYD SGKDIQNVLS 900 NYGGSSRDIE TELSAAGFGV PNMSFKPGCS NDVPITEAGV LNSGLWPNQT QRMRTYTKVQ 960 KRGSVGRTID ATRYKGYDEL RHDLARMFGI EGQLEDTQRM EWKLVYVDHE NDILLVGDDP 1020 WEEFVSCVQS IKILSSAEVQ QMSLDGDLGN LPVPNQACSG TDSGNAWRGH YDDNSAASFN 1080 R

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence

MKAPTNGYLA NSGEGERKAI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE  60
TDSIPSYPNL PSKLICLLHN VTLHADPETD EVYAQMTLQP VNKYDQEALL LSDMGLKQSR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQTWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLVAGDSV LVIRDEKSQL LLGIKRANRQ LPALSSSVIS  240
SDSMHIGILA AAAHAAANSS PFTIFYNPRA SPSEFVIPFA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTITGIADL DPVRWKSSQW RNLQVGWDES TAGERPSRVS IWEIEPVVTP  360
FYICPPPFFR PKFPKHPGFP DDESDMESVF KRGMPWLGDD LGLKDATSSV LPGLSLVQWM  420
NMQQNNQLSA AQSGIFPSAL NGNLSTEDHS KLLNFQSPAL AATNLQFGKT NQFNQQTNQL  480
QQTSLVGTQP QQLQQLLHSS VNSQPQQHPQ QHSIQLRQQP QLPQHQQQCP PHLQQPQQLQ  540
QQQNMMPLAC VNNGSSVATS QISNQNLQQP ALYSQLQQQH LLTGNTQPQQ PASSNKSSLT  600
SLPQDVQYQQ LEHQNNLLQK TQQQQTPMLQ APLQTLQQNL IQRQQVQQTS QQNLSEQNLQ  660
LQLLQKLQQQ QQQQQQQLLS PLSNHLEPQL PQQQQPLQQN RPFQQAPVAQ QQPSGNSFST  720
STLLQSPQHP VNQLQGQNKS RIFVKAYSGP TDGDAPSCST SPSTNNCHVS SSKFLNRNQQ  780
GPITQAGESV IDPSPILVHE LQSRSDVRVK HELSGSKGAE QPKFRSNTEH LDAASSATSY  840
CLDTGGIQQN FPLPGLCLDS DVQSHSRSTL PFTSTVDSLA PDALLSRGYD SGKDIQNVLS  900
NYGGSSRDIE TELSAAGFGV PNMSFKPGCS NDVPITEAGV LNSGLWPNQT QRMRTYTKVQ  960
KRGSVGRTID ATRYKGYDEL RHDLARMFGI EGQLEDTQRM EWKLVYVDHE NDILLVGDDP  1020
WEEFVSCVQS IKILSSAEVQ QMSLDGDLGN LPVPNQACSG TDSGNAWRGH YDDNSAASFN  1080
R

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein