PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027174647.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 200aa MW: 23311.2 Da PI: 5.3329 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 88.2 | 1.4e-27 | 2 | 153 | 159 | 315 |
GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesF 253 eet + L+ fA+++ +pf fn+ v+++l+dl+ ++++++ +E++aV l +l +ll+ + le +++ ++ +l+P+v+vv e ea++n++ F XP_027174647.1 2 EETVKWLSAFADSISLPFTFNI-VVSDLKDLKEDMFKLEADEVVAVYLDRRLWTLLAWPNYLE----ALIAMISKLKPRVMVVKEMEASTNNPIF 91 788899***************9.7999****************************95555555....5*************************** PP GRAS 254 lerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 lerf eal ++s +f+s++ + ++ r+ E+++ ++ i+n++++e ++ +e++++W XP_027174647.1 92 LERFHEALIFFSGMFESIKDCMDNHIFYRKLTEEVYCRNMIRNIITAEVLLQFIWMENASSW 153 ******************99998888*********************998888888888888 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MEETVKWLSA FADSISLPFT FNIVVSDLKD LKEDMFKLEA DEVVAVYLDR RLWTLLAWPN 60 YLEALIAMIS KLKPRVMVVK EMEASTNNPI FLERFHEALI FFSGMFESIK DCMDNHIFYR 120 KLTEEVYCRN MIRNIITAEV LLQFIWMENA SSWGGKEPHL SQYLPGNSSM TQSDQRLLQD 180 LKVRLFAKCF VGHCTLSSVF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01570.1 | 2e-17 | GRAS family protein |