PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174641.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 736aa MW: 82955.4 Da PI: 5.0667

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174641.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	60.6	2.9e-19	567	614	5	52
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 i+ e+l+++ +++dAAk++gv+ ++LKriCR+yGIkRWP Rk +++ XP_027174641.1 567 ITREVLEQNSTRKLEDAAKHIGVSRSTLKRICREYGIKRWPPRKARKV 614 899*****************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence
MAIMEAQTSP SPPFSTEGLG PCELSYSHSF NAYNEHNWVF WSTCGNDEGG CGKPHHLSAT 60 ADGAVIKDQI KWVLQLVMEA ISWWRCLVQF WGLVKIGDKT CLTTRDQPFA LQYYHCNVTS 120 LLKPCEYRKH CLAYLIPVDG EIIIGPLGRV FRSGLPERVW NVRDYTIREY PQRDYAVSRV 180 EEYWVLPIYH HPTQHLPIGI LEIVSPCTLT RLPRRRVLEK LECPPPEVNL TTTCVSPPAE 240 VNSCQDGEIA IIDEALSKVR QIRGLSYDAT ETWTISGEIL SHHRGVDFIR KGQGVVGRAF 300 SSKSACFCRD VGQLSITEYP LVPNARHNGD SACFAVCLQS SCPNNCIYVL EFFLPTNEED 360 EDEDEADTRD PRTLLNSIME TLKEHLGSSF KIASGQELGQ KLTVEVIKVS PEDEYSFEIC 420 STTGTESQPR LEEAQGGDGM MQLDFSSQQV DTANAYINVQ QTGIFGSPPR PEHEQGLVNI 480 SYQELNLAAV DVAHNSTNGI YEQQNGIVRS PSTTGQELVQ NMVSIEHDEP IVEDPQRDGA 540 SIEQRDNEVT NLKVPKPSCT LKSDLGITRE VLEQNSTRKL EDAAKHIGVS RSTLKRICRE 600 YGIKRWPPRK ARKVSQAFAV QKTVQPSTED THEHHRSDAT RVEDDNGMWV KAEYQGRMIK 660 FRLPFSARKI DLEENVVQRL NVAMGSFIIE YQDEDDDRIW ITCDGDLRTS MSTLSSLGRT 720 TIKMYIVEDS PSKRDQ

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence

MAIMEAQTSP SPPFSTEGLG PCELSYSHSF NAYNEHNWVF WSTCGNDEGG CGKPHHLSAT  60
ADGAVIKDQI KWVLQLVMEA ISWWRCLVQF WGLVKIGDKT CLTTRDQPFA LQYYHCNVTS  120
LLKPCEYRKH CLAYLIPVDG EIIIGPLGRV FRSGLPERVW NVRDYTIREY PQRDYAVSRV  180
EEYWVLPIYH HPTQHLPIGI LEIVSPCTLT RLPRRRVLEK LECPPPEVNL TTTCVSPPAE  240
VNSCQDGEIA IIDEALSKVR QIRGLSYDAT ETWTISGEIL SHHRGVDFIR KGQGVVGRAF  300
SSKSACFCRD VGQLSITEYP LVPNARHNGD SACFAVCLQS SCPNNCIYVL EFFLPTNEED  360
EDEDEADTRD PRTLLNSIME TLKEHLGSSF KIASGQELGQ KLTVEVIKVS PEDEYSFEIC  420
STTGTESQPR LEEAQGGDGM MQLDFSSQQV DTANAYINVQ QTGIFGSPPR PEHEQGLVNI  480
SYQELNLAAV DVAHNSTNGI YEQQNGIVRS PSTTGQELVQ NMVSIEHDEP IVEDPQRDGA  540
SIEQRDNEVT NLKVPKPSCT LKSDLGITRE VLEQNSTRKL EDAAKHIGVS RSTLKRICRE  600
YGIKRWPPRK ARKVSQAFAV QKTVQPSTED THEHHRSDAT RVEDDNGMWV KAEYQGRMIK  660
FRLPFSARKI DLEENVVQRL NVAMGSFIIE YQDEDDDRIW ITCDGDLRTS MSTLSSLGRT  720
TIKMYIVEDS PSKRDQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-43	Nin-like family protein