PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027174621.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family RAV
Protein Properties Length: 324aa    MW: 36760.5 Da    PI: 6.3716
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027174621.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.59.1e-105299155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +++kGV   + +g W A+I+       + r++lg+f ++ +Aa a++ a+ kl+g
  XP_027174621.1 52 TRFKGVVAQR-NGHWGAQIYA------HDRIWLGTFKSEIDAAMAYDSAAIKLRG 99
                    5799**7555.8*******99......7**********99*************98 PP
2B382.93.1e-26168263183
                     EEEE-..-HHHHTT-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                     f k+ltpsdv+k++rlv+pkk+a  +                   e + +l++ d+s rsW+++++y+k+s+++v+t+GW++Fv+++gL+++D v
  XP_027174621.1 168 FHKELTPSDVGKLNRLVIPKKYALMYfprlncdvqetdqdiA--GEDDAELVFFDTSMRSWKFRYCYWKSSQSFVFTRGWNKFVRDKGLRAKDLV 260
                     89******************************9998888442..346789********************************************* PP

                     EEE CS
              B3  81 vFk 83 
                     +F+
  XP_027174621.1 261 IFS 263
                     **9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    
MAIIEVASVT MQEESEICGT ATNSIQEIFD SNSSSHLIQN KRQKQDTDVA STRFKGVVAQ  60
RNGHWGAQIY AHDRIWLGTF KSEIDAAMAY DSAAIKLRGG DSYRNFPWTS ITKEEPKFQS  120
QFSTQAVLNM IKDGSYPTKF VEYLRAQSFV QSFATVPSNE GFLCKKLFHK ELTPSDVGKL  180
NRLVIPKKYA LMYFPRLNCD VQETDQDIAG EDDAELVFFD TSMRSWKFRY CYWKSSQSFV  240
FTRGWNKFVR DKGLRAKDLV IFSQCEFRDG SDELQSVLMI DGGFHESFDG ALMTNSSKGE  300
NNLPEMEQNG SVKGGLKLFG VQII
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.15e-93RAV family protein