PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027174461.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 819aa MW: 94618.8 Da PI: 8.3417

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027174461.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.6	2.8e-20	85	175	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ ++g r++vC +eg+r+e+ + ++++r+ +a rtgC a+++vk ++ + k++vt++ eHnH+la XP_027174461.1 85 EFYNLYAKLSGFGIRKSNAKRD-EDGISRFRKWVCCCEGYRNEKWFNyEDRKRKAKAIRRTGCGACFRVKYDTeSVKYVVTRFIMEHNHPLA 175 6**************98887.8898999********9988767899999*************9899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 819 aa Download sequence
MGQDGVLKTH DMVQETEKGK MGMDGCGRLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE 60 ADELVGAIGV DDVMKLTFDT EEAGEFYNLY AKLSGFGIRK SNAKRDEDGI SRFRKWVCCC 120 EGYRNEKWFN YEDRKRKAKA IRRTGCGACF RVKYDTESVK YVVTRFIMEH NHPLASEASV 180 QHLRSYRKVS DAEYAQAKSL KLVGARICQI MKHFVIKAGG YSNVGFCIKD LYNRMDEERR 240 KDIFNGDAEG ALGFLAAKKD ADDMFFYKYH VDNEGKLARL FWADSKSRVD FSVFGDVLVF 300 DTTYKTNKYR KPLVVLAGVN NHLNSTIFGC ALLSDERIET YEWVLSTFVE AMKGRKPVAV 360 MTDGDSAMRR AIKNLLPDAC HRLCSWHLHR NARSNIRCEE FNNRLYDLMA RKFSTLEFED 420 RWARLVNECG VVENEWVKKL YRRRRLWAEA YLRGHFFAGM RSTQRCEKMN AFLNEYLNEK 480 MRLYEFVRSF DLAIAWLRHT ESKAVHTSEN TKPVLTTILP ELEGSAAVVF TRNVFFMVRK 540 HLNRQGLLIS EGWSEDGGSR TYYYSKYGGH EISWRVVYDR SMEKLICSCM KFESKGIPCA 600 HMFRVMVVEG MNRIPEACIS KRLTKGVYST NNGMKAFVAD EQLTQMARYG TLKSSCNSMC 660 YYASYMDDAF NDLQQMFDKH SVDLKEKWIE SGYGGDGFAM DSRVMNDRSR RTFGLLDPRV 720 SRCKVTNDLT CDIWVEDCRQ ATTNEHAHTK RIRTTQQFMM IIWKIVWMNR WKNQLKLVRG 780 GATQANGEDK HLHHKHAVAV EGTQVTNKEV QEKDEAQLL

Sequence ? help Back to Top

Protein Sequence Length: 819 aa Download sequence

MGQDGVLKTH DMVQETEKGK MGMDGCGRLM SFDLNQEPEC DRDTCSEESG GSIGGHEDEE  60
ADELVGAIGV DDVMKLTFDT EEAGEFYNLY AKLSGFGIRK SNAKRDEDGI SRFRKWVCCC  120
EGYRNEKWFN YEDRKRKAKA IRRTGCGACF RVKYDTESVK YVVTRFIMEH NHPLASEASV  180
QHLRSYRKVS DAEYAQAKSL KLVGARICQI MKHFVIKAGG YSNVGFCIKD LYNRMDEERR  240
KDIFNGDAEG ALGFLAAKKD ADDMFFYKYH VDNEGKLARL FWADSKSRVD FSVFGDVLVF  300
DTTYKTNKYR KPLVVLAGVN NHLNSTIFGC ALLSDERIET YEWVLSTFVE AMKGRKPVAV  360
MTDGDSAMRR AIKNLLPDAC HRLCSWHLHR NARSNIRCEE FNNRLYDLMA RKFSTLEFED  420
RWARLVNECG VVENEWVKKL YRRRRLWAEA YLRGHFFAGM RSTQRCEKMN AFLNEYLNEK  480
MRLYEFVRSF DLAIAWLRHT ESKAVHTSEN TKPVLTTILP ELEGSAAVVF TRNVFFMVRK  540
HLNRQGLLIS EGWSEDGGSR TYYYSKYGGH EISWRVVYDR SMEKLICSCM KFESKGIPCA  600
HMFRVMVVEG MNRIPEACIS KRLTKGVYST NNGMKAFVAD EQLTQMARYG TLKSSCNSMC  660
YYASYMDDAF NDLQQMFDKH SVDLKEKWIE SGYGGDGFAM DSRVMNDRSR RTFGLLDPRV  720
SRCKVTNDLT CDIWVEDCRQ ATTNEHAHTK RIRTTQQFMM IIWKIVWMNR WKNQLKLVRG  780
GATQANGEDK HLHHKHAVAV EGTQVTNKEV QEKDEAQLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	441	446	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-93	FAR1 family protein