PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173316.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB_related

Protein Properties

Length: 902aa MW: 99056.2 Da PI: 5.037

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.8	1.2e-08	843	895	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 +WT+ E+e+l+++v+ l ++ Wk I + g gRt ++k++w++ XP_027173316.1 843 PWTKAEEEKLKEGVQTLSSPhdrsiPWKQILEFGGdvfqRGRTTIDLKDKWRN 895 8***************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence
MASEIPVPST VAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLRILE 60 SLIVKGNQNK NKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQSFI 120 VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDISVNG GNSNVLAQRL 180 EDCSINNKVT LPYGNAGSPT HDNMDDESQE NLPDTNLLPA KRKTAAMRSE IVEIQTDGDQ 240 TTLDDCCTSH VQATKKFKQN ANFTEDTVVQ NAIAPTTHGP STTLSEGVVR YIEKEGCNSK 300 KEVQCGSSTP QNVDDDLEGN FPESNSLPAK RNRTAIAAEN SEGKTLKDQI PLGDGCDIRG 360 EVVKKFKQDG NSMMDDIDED TVASPVHGLM KFSSEGTVKH IEKEGCNLET EVQVGGVESN 420 GSPHGDDDQH YQLKRIAQSS HAFHQDHLVC DLQVPHDDAK VAELHAELDG QNNSVDETNG 480 HDQGFELQTE NATSLAMGVM ERNNSPENPV QNFEGNFQLS FGGSGSKDDM QHNPDFDMTS 540 DSDDYRDERM DIAMKKDALL SSQCTNSQDS FATQAKYCVK CNKEGQLLVC SSDTCQLAVH 600 SSCLPSAAHF DGKGKFYCPF CAYSRAISEY MQVKRKASFA RKDLASFIGV QTVCQQKKAT 660 MKLGRESRNE LQKNEGNNSE DFVNKVSDSH CGVKMGNKHQ SEPPLSCSSD HSHSGEKVVS 720 PSDGMPNTLV SGNLERKYME PQCQLLGVQV EQPVVAHPVH GSDVDCKEAH MADRNEGNAG 780 AEGKKVSEIP ESALPQEPVC GPISESSEED NEKSVRSYSI RLRRPIKNYT YPAIPQLRRK 840 ILPWTKAEEE KLKEGVQTLS SPHDRSIPWK QILEFGGDVF QRGRTTIDLK DKWRNICKGG 900 PR

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence

MASEIPVPST VAWSWVIEAL SRSKQADTSL LIDIIKKAPE VSDDELGKNC REVVSLRILE  60
SLIVKGNQNK NKDAATVGQK LELDPSNNCE DVLRQISEMS AMDLTAVAPE MLNGDVQSFI  120
VHKRASLPKP ALQKLKDAIL EGSHSILSSL KERSGLTVTT QCNDDISVNG GNSNVLAQRL  180
EDCSINNKVT LPYGNAGSPT HDNMDDESQE NLPDTNLLPA KRKTAAMRSE IVEIQTDGDQ  240
TTLDDCCTSH VQATKKFKQN ANFTEDTVVQ NAIAPTTHGP STTLSEGVVR YIEKEGCNSK  300
KEVQCGSSTP QNVDDDLEGN FPESNSLPAK RNRTAIAAEN SEGKTLKDQI PLGDGCDIRG  360
EVVKKFKQDG NSMMDDIDED TVASPVHGLM KFSSEGTVKH IEKEGCNLET EVQVGGVESN  420
GSPHGDDDQH YQLKRIAQSS HAFHQDHLVC DLQVPHDDAK VAELHAELDG QNNSVDETNG  480
HDQGFELQTE NATSLAMGVM ERNNSPENPV QNFEGNFQLS FGGSGSKDDM QHNPDFDMTS  540
DSDDYRDERM DIAMKKDALL SSQCTNSQDS FATQAKYCVK CNKEGQLLVC SSDTCQLAVH  600
SSCLPSAAHF DGKGKFYCPF CAYSRAISEY MQVKRKASFA RKDLASFIGV QTVCQQKKAT  660
MKLGRESRNE LQKNEGNNSE DFVNKVSDSH CGVKMGNKHQ SEPPLSCSSD HSHSGEKVVS  720
PSDGMPNTLV SGNLERKYME PQCQLLGVQV EQPVVAHPVH GSDVDCKEAH MADRNEGNAG  780
AEGKKVSEIP ESALPQEPVC GPISESSEED NEKSVRSYSI RLRRPIKNYT YPAIPQLRRK  840
ILPWTKAEEE KLKEGVQTLS SPHDRSIPWK QILEFGGDVF QRGRTTIDLK DKWRNICKGG  900
PR