PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027173104.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

ARF

Protein Properties

Length: 705aa MW: 76763.6 Da PI: 6.8392

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027173104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.7	1.1e-23	121	222	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+GW++Fv++++L +gD++vF + + XP_027173104.1 121 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGWSSFVNSKKLVAGDSIVFL--RAK 211 89**************************996555555..89*******************************************..347 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_027173104.1 212 NGDLCVGIRRA 222 8888**997 PP
2	Auxin_resp	113.8	1.6e-37	287	370	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fe+vY+Pras++eF+vk++ v++al+++++ GmRfkm fetedss++++ +Gtv++v+ +dp+rWp+S+Wr+L+ XP_027173104.1 287 AATLAANGQPFEIVYYPRASNPEFCVKASLVRAALQIHWCSGMRFKMPFETEDSSRISWfMGTVSSVHVADPIRWPDSPWRLLQ 370 68899*****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 705 aa Download sequence
MIAFMDSKDK VHETEKCLDS QLWHACAGSM VQMPPANSKV LYFPQGHAEH ACGNVDFGNC 60 PVIPAYTRCR VSAIKFMADS GTDEVFAKVQ LIPIEGNGAD FDEDGVGGVS GMDNREKPTS 120 FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGDT WKFRHIYRGT 180 PRRHLLTTGW SSFVNSKKLV AGDSIVFLRA KNGDLCVGIR RARRGVGGGL EPSSGWNAAG 240 RSCVMPHGGF SAFLREDESK LMRNGSESSS GTSVGRGRLK AESVTEAATL AANGQPFEIV 300 YYPRASNPEF CVKASLVRAA LQIHWCSGMR FKMPFETEDS SRISWFMGTV SSVHVADPIR 360 WPDSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LFPFSPPRKK LRLPQHSQFP 420 LDGQLPAPTF SGNHLLGPSS HFGCLPDNTP AGMQGARHAQ YGLSLSDLHF NKLQSGLFPV 480 GLQPLYPTAI PGHSNRPIIH KPSSGENISC LLTAGSSAQS PEKIGSCKAP QFVLFGQPIL 540 TEQQISLSCS GDAVSPVRTG NSSSDDNADK MGNTSDVSGS ALNLERVNER SSCEGSEDNL 600 DIGHCKVFME SEDVGRTLDL SLLESYEQLY EKLADMFGVG TSEVLNHVLY RDRTGAVRQL 660 GDETFSVFAK TARRLTILTD LSSDNVGPYT AEIMRKTSVS NCMAG

Sequence ? help Back to Top

Protein Sequence Length: 705 aa Download sequence

MIAFMDSKDK VHETEKCLDS QLWHACAGSM VQMPPANSKV LYFPQGHAEH ACGNVDFGNC  60
PVIPAYTRCR VSAIKFMADS GTDEVFAKVQ LIPIEGNGAD FDEDGVGGVS GMDNREKPTS  120
FAKTLTQSDA NNGGGFSVPR YCAETIFPRL DYSADPPVQT ILAKDVHGDT WKFRHIYRGT  180
PRRHLLTTGW SSFVNSKKLV AGDSIVFLRA KNGDLCVGIR RARRGVGGGL EPSSGWNAAG  240
RSCVMPHGGF SAFLREDESK LMRNGSESSS GTSVGRGRLK AESVTEAATL AANGQPFEIV  300
YYPRASNPEF CVKASLVRAA LQIHWCSGMR FKMPFETEDS SRISWFMGTV SSVHVADPIR  360
WPDSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPTIH LFPFSPPRKK LRLPQHSQFP  420
LDGQLPAPTF SGNHLLGPSS HFGCLPDNTP AGMQGARHAQ YGLSLSDLHF NKLQSGLFPV  480
GLQPLYPTAI PGHSNRPIIH KPSSGENISC LLTAGSSAQS PEKIGSCKAP QFVLFGQPIL  540
TEQQISLSCS GDAVSPVRTG NSSSDDNADK MGNTSDVSGS ALNLERVNER SSCEGSEDNL  600
DIGHCKVFME SEDVGRTLDL SLLESYEQLY EKLADMFGVG TSEVLNHVLY RDRTGAVRQL  660
GDETFSVFAK TARRLTILTD LSSDNVGPYT AEIMRKTSVS NCMAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein