PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173088.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 538aa    MW: 60583.5 Da    PI: 4.595
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173088.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS134.79.9e-421565373374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                     +lL++ Aea++ g+ ela+ + +r+se +sp gd+++Rl  y+  AL ++              +++s    ++  +a+k+f++++P  kf+h++
  XP_027173088.1 156 HLLMAYAEAMEMGQEELAEVIAKRISEKVSPVGDTVERLLYYMFHALDKQSDY----------LKQES---AKNFYQAFKAFYQIFPNGKFAHFA 237
                     89*********************************************998665..........33333...67899999**************** PP

            GRAS  98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLa..sRpegppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnv 180
                     aN aIle++  + +++ i Dfdi++G+QW++L++a+   +R+    s++         +            + e  ++rL+++A++ g+++  + 
  XP_027173088.1 238 ANLAILESLPDDaDTIRIFDFDIGEGIQWASLIEAIGhqCREVTLTSVKFAEG-----EdavmdanplTMWRFEDAKKRLSDYARSYGLKLMVDE 327
                     *********8877***********************94445555556666543.....233444777799999********************99 PP

            GRAS 181 lvakrledl..eleeLrvkp......gEalaVnlvlqlhrlldesvsles.....erdevLklvks......lsPkvvvvveqe..adh.nsesF 253
                     +   +l+dl  el++++ ++      +  l+ n+++ l ++ + +   +      + +++L+lv         +  v+++ + +   +  n++++
  XP_027173088.1 328 V---ELADLvgELKNISNRKqgssgrRQFLVFNCMVGLPHMGRVRSRRDVfeflrASQNFLQLVHAsaacgnYKGGVITFGDGDawEKVrNTSTY 419
                     8...333332345555544455555699************995444443344555778999998752222225778******9943233599999 PP

            GRAS 254 lerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.s 346
                        +   + +y al++s++ ++p++  e+r+ +E+ +++++++++  +e+ e r+r  +le        +G++ ++ls +  ++ak ++r+ +  
  XP_027173088.1 420 GSFLDGNMAHYQALLESIKLNFPSHLgEARTAMENLFVAPSVSSLAWAEKWEERKRYGQLE------IGFGLEGLKLSRESLMEAKEVVREGEsL 508
                     999999*****************999899**********************9666665444......4689999******************989 PP

            GRAS 347 dgyrve.eesgslvlgWkdrpLvsvSaWr 374
                      g r++ e+++++v+ W++ p+v vS+Wr
  XP_027173088.1 509 YGVRIQgESHNEMVMDWRGTPMVRVSCWR 537
                     9999998999******************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    
MTESQIFQPS WSYFRHDNNL NSILDNVRED GFCGGGEYTC YPLPTLMEES YLETSMLQER  60
CANFPVHLDG DMDITTEDVL VYFQDPISID GEITDVSMSL EESKGGNCIH SCHQISMPSS  120
SMISSHAASL DVTSMPSSLV LPAEGVELDN ELAVFHLLMA YAEAMEMGQE ELAEVIAKRI  180
SEKVSPVGDT VERLLYYMFH ALDKQSDYLK QESAKNFYQA FKAFYQIFPN GKFAHFAANL  240
AILESLPDDA DTIRIFDFDI GEGIQWASLI EAIGHQCREV TLTSVKFAEG EDAVMDANPL  300
TMWRFEDAKK RLSDYARSYG LKLMVDEVEL ADLVGELKNI SNRKQGSSGR RQFLVFNCMV  360
GLPHMGRVRS RRDVFEFLRA SQNFLQLVHA SAACGNYKGG VITFGDGDAW EKVRNTSTYG  420
SFLDGNMAHY QALLESIKLN FPSHLGEART AMENLFVAPS VSSLAWAEKW EERKRYGQLE  480
IGFGLEGLKL SRESLMEAKE VVREGESLYG VRIQGESHNE MVMDWRGTPM VRVSCWRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.14e-17GRAS family protein