PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027173083.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 499aa    MW: 55959.8 Da    PI: 4.4671
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027173083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS149.43.4e-461414981373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l +lL++  eav++g++ela+ ++ r+ e+  p g++++Rla+ + +  +++ +            +++s   +++  aa+k+f++ +P+ +f+h
  XP_027173083.1 141 LHHLLTALGEAVENGHQELAEVIVRRITERIDPLGEALERLAFNLFQSAENQGSY----------LRQQS---TKNFEAAFKAFYQWFPYGRFAH 222
                     5799**************************************9888776666554..........33333...56777899************** PP

            GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taN+aIlea+ ++ e++Hi+Dfd+++G+QWp+L+++++ +     slR+T + s   +s    eet++rL + A++lg++++ + +   +ledl
  XP_027173083.1 223 FTANSAILEAMPSDaETIHIVDFDMGEGIQWPPLMDSISRK---GKSLRLTSIIS--GDSCWVFEETRQRLYDHARSLGLSLNVEEM---ALEDL 309
                     ***********98889**********************986...458********..45999********************99997...88999 PP

            GRAS 190 eleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvksl......sPkvvvvveqe..adh.nsesFlerflealeyysalfdsl 271
                       e+ r+k+    +E la nl+++l ++   + + +s+  e+L l k+l         ++++ + e   +  n +++   f + + +y alf+s+
  XP_027173083.1 310 VAEMKRTKKkggaREWLAFNLMVALPHMG--RRADRSRVVEFLTLAKDLlvysagDKGIITIGDGEagGNFaNCPEYSSFFNSHFTHYQALFESM 402
                     88888888888889**************8..445555689*******995554433579***9999333446777999***************** PP

            GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee...aGFkpvplsekaakqaklllrkvksdgyrve...eesgslv 359
                     e ++p    e+ri +E  +l++ +++            h  +++W+++ ++   +G+   ++s +   +ak ++++ k   y+v+   e+++++v
  XP_027173083.1 403 ECNFPVYLaEARIAMESLFLAPYVSS------------HSWFQHWQDARGSqplCGLDGRRMSRDCLIEAKEIVNEQKAS-YKVNfqkENENEIV 484
                     *****87669********99988764............55577887766544559**********************954.888766677999** PP

            GRAS 360 lgWkdrpLvsvSaW 373
                     l W++ p+v vS+W
  XP_027173083.1 485 LEWRGIPIVRVSSW 498
                     ************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MDICIDEPHD FSSSFATEKS SGISFDSYFA AVTSPDSLVE FLIFDDEKRG GDTMAHIMDG  60
LEPISSSGAI EEDCQWLEES DNGEDYISSQ LTPEADAWSA CPPMEQSKPG SASTMNATPS  120
ENMSLTFPPV NNMGTDTQLG LHHLLTALGE AVENGHQELA EVIVRRITER IDPLGEALER  180
LAFNLFQSAE NQGSYLRQQS TKNFEAAFKA FYQWFPYGRF AHFTANSAIL EAMPSDAETI  240
HIVDFDMGEG IQWPPLMDSI SRKGKSLRLT SIISGDSCWV FEETRQRLYD HARSLGLSLN  300
VEEMALEDLV AEMKRTKKKG GAREWLAFNL MVALPHMGRR ADRSRVVEFL TLAKDLLVYS  360
AGDKGIITIG DGEAGGNFAN CPEYSSFFNS HFTHYQALFE SMECNFPVYL AEARIAMESL  420
FLAPYVSSHS WFQHWQDARG SQPLCGLDGR RMSRDCLIEA KEIVNEQKAS YKVNFQKENE  480
NEIVLEWRGI PIVRVSSWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17490.12e-22GRAS family protein