PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172929.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 428aa MW: 46805.5 Da PI: 7.4514

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.1	5.2e-12	55	80	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG+rC+F+H+ XP_027172929.1 55 PGEPDCIYYLRTGKCGYGSRCRFNHP 80 5789*********************8 PP
2	zf-CCCH	34.1	4.7e-11	98	123	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + ++Cr++ rtG+Ck+G+ C+++H++ XP_027172929.1 98 GKPECRHYIRTGICKFGSACRYHHPQ 123 5799********************97 PP
3	zf-CCCH	33.3	8.4e-11	143	168	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rt tCk+G CkF H++ XP_027172929.1 143 DEKPCPYYMRTSTCKFGVMCKFDHPQ 168 5789********************97 PP
4	zf-CCCH	30.2	7.9e-10	275	300	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++f tG CkyG+ Ck+ H++ XP_027172929.1 275 DQPECHDFVNTGSCKYGADCKYYHPR 300 689*********************96 PP
5	zf-CCCH	31.5	3e-10	321	345	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++a G C+yG++Ck+ H+ XP_027172929.1 321 GQAVCSYYAMHGLCRYGPTCKYDHP 345 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence
MMKNIEVQHN GGVSKSSNLF AGKERVDEAL GVLKIEDNGD DTGGAYGAVC FPDRPGEPDC 60 IYYLRTGKCG YGSRCRFNHP SYSSQGHQNS GVLPEREGKP ECRHYIRTGI CKFGSACRYH 120 HPQDRHNSDP LLLNIWGFPM RKDEKPCPYY MRTSTCKFGV MCKFDHPQPV SAANGLHVTG 180 STAYGSTTLA FMTSSSIPYV GGVSDLSIPK TNSIINPSVQ GSQSYMPLYL SPFQCWSTYM 240 GTMGGSSILD DLADQTFGGQ IPLLSSSSHQ PDRPDQPECH DFVNTGSCKY GADCKYYHPR 300 NKVAPTTSNL LGPLGLPLRP GQAVCSYYAM HGLCRYGPTC KYDHPLAGYV GVPSLVFNTS 360 VLPYQWNSPT VPSTETSPSM SSKLPDLSRS SEVTMQKGQN SNTEKLLHIG APPSTSQRPL 420 EVQQDESD

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence

MMKNIEVQHN GGVSKSSNLF AGKERVDEAL GVLKIEDNGD DTGGAYGAVC FPDRPGEPDC  60
IYYLRTGKCG YGSRCRFNHP SYSSQGHQNS GVLPEREGKP ECRHYIRTGI CKFGSACRYH  120
HPQDRHNSDP LLLNIWGFPM RKDEKPCPYY MRTSTCKFGV MCKFDHPQPV SAANGLHVTG  180
STAYGSTTLA FMTSSSIPYV GGVSDLSIPK TNSIINPSVQ GSQSYMPLYL SPFQCWSTYM  240
GTMGGSSILD DLADQTFGGQ IPLLSSSSHQ PDRPDQPECH DFVNTGSCKY GADCKYYHPR  300
NKVAPTTSNL LGPLGLPLRP GQAVCSYYAM HGLCRYGPTC KYDHPLAGYV GVPSLVFNTS  360
VLPYQWNSPT VPSTETSPSM SSKLPDLSRS SEVTMQKGQN SNTEKLLHIG APPSTSQRPL  420
EVQQDESD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04990.2	3e-77	C3H family protein