PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172469.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C3H

Protein Properties

Length: 545aa MW: 59019.4 Da PI: 8.0701

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.6	1.6e-11	172	196	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCkyGd+CkF H+ XP_027172469.1 172 GEKDCAYYMLTRTCKYGDSCKFDHP 196 7889********************8 PP
2	zf-CCCH	36.9	6.1e-12	223	248	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+ff++t Ck+G rCkF+H+ XP_027172469.1 223 PGEPDCPFFMKTQRCKFGTRCKFNHP 248 5789*********************8 PP
3	zf-CCCH	39.3	1e-12	271	295	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f+++tG+Ck+G++CkF+H++ XP_027172469.1 271 EPPCAFYMKTGQCKFGATCKFHHPK 295 79*********************96 PP
4	zf-CCCH	34.1	4.5e-11	347	370	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG CkyG +C+++H+ XP_027172469.1 347 EVDCPFYLKTGSCKYGQTCRYNHP 370 689********************9 PP
5	zf-CCCH	36.6	7.6e-12	430	454	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+++tG Ck+G rCkF+H+ XP_027172469.1 430 GETACDFYMKTGDCKFGQRCKFHHP 454 6789********************8 PP
6	zf-CCCH	36.5	8.1e-12	488	509	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++C+F H+p XP_027172469.1 488 CPYYMKTGTCKYGATCRFDHPP 509 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDTSSL LGSSRYLTSS 60 DPLFSSSAAR LFSHSDSYSF RIPGLDAVSP TTTSKPASSS SSWPGPPGVD IADPFILATL 120 KRSSSQALYH QTVFGAHNPI GQTEAWFSTN PLAKRPRFES AGNLPIYPQR PGEKDCAYYM 180 LTRTCKYGDS CKFDHPIWVP EGGIPDWKEV PLVDTSEPLP ERPGEPDCPF FMKTQRCKFG 240 TRCKFNHPIE KITPLVALET NSAVLPERPS EPPCAFYMKT GQCKFGATCK FHHPKDLQIS 300 TAGQENSFGE QSKLSTNETS GDFKAVKPPV TPAMMHNTKG LPIRLGEVDC PFYLKTGSCK 360 YGQTCRYNHP DRNAINPPAA AIGAAYIASP APNLSIGIVN PAASILQTFD PRLTQTTVGL 420 AAAIYPQRPG ETACDFYMKT GDCKFGQRCK FHHPIDRSAP IISGKETQQE NVKLTRAGLP 480 RREGAIHCPY YMKTGTCKYG ATCRFDHPPP GEVLAMGTTA QGTWSPTGGE AEEGSSGPET 540 GGEKQ

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MANQMYRFNF SSNYGGGGEA AAAAANLYNT NSSRSMVADS FLSSSDTSSL LGSSRYLTSS  60
DPLFSSSAAR LFSHSDSYSF RIPGLDAVSP TTTSKPASSS SSWPGPPGVD IADPFILATL  120
KRSSSQALYH QTVFGAHNPI GQTEAWFSTN PLAKRPRFES AGNLPIYPQR PGEKDCAYYM  180
LTRTCKYGDS CKFDHPIWVP EGGIPDWKEV PLVDTSEPLP ERPGEPDCPF FMKTQRCKFG  240
TRCKFNHPIE KITPLVALET NSAVLPERPS EPPCAFYMKT GQCKFGATCK FHHPKDLQIS  300
TAGQENSFGE QSKLSTNETS GDFKAVKPPV TPAMMHNTKG LPIRLGEVDC PFYLKTGSCK  360
YGQTCRYNHP DRNAINPPAA AIGAAYIASP APNLSIGIVN PAASILQTFD PRLTQTTVGL  420
AAAIYPQRPG ETACDFYMKT GDCKFGQRCK FHHPIDRSAP IISGKETQQE NVKLTRAGLP  480
RREGAIHCPY YMKTGTCKYG ATCRFDHPPP GEVLAMGTTA QGTWSPTGGE AEEGSSGPET  540
GGEKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-179	C3H family protein