PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027172376.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 513aa MW: 58830 Da PI: 9.1698 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 62.5 | 1.2e-19 | 82 | 171 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 fY YA+ +GF vrk ++k k+++ + r + C+keg+r+e++ + ++ r+++a+tr++C+a+lkv++++ ++k++v ++++ H H l+ XP_027172376.1 82 FYMMYARATGFGVRKGCKRKDKKSD-VRVRSWLCNKEGERHEKHLNrGDQIREPKAVTRVNCQAHLKVRLHEsKQKYVVVQFVSGHCHRLC 171 9****************99997777.9999***********999885788899******************99*****************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 513 aa Download sequence |
MVEGHPWSTR DVGSGAEGEE SGNTFNIVHS TTNCRTERIL EQGAVGDIVG EDGPNVNAAF 60 HFIDDIDVGN MEFDSIEEAE AFYMMYARAT GFGVRKGCKR KDKKSDVRVR SWLCNKEGER 120 HEKHLNRGDQ IREPKAVTRV NCQAHLKVRL HESKQKYVVV QFVSGHCHRL CSPESVSFTR 180 SHRKVGKSDL QQAVLMQQAG IRTSHIMRLL AVQAGGYRNL GFHETDMYNA LNRQRQVAVG 240 DGDSDSALAF LLGKQRGDPN LFFKYSVDGH GRLNSLLWAD SVCRDDYRCF GDVLVFDSTY 300 NTNQYRFPLV VLCGVNNHYS TCIFACAFIV REGDEGYDWV ISTFLEAMNG RKPIAVVTDG 360 DKSMRKCIKK FMPTAKHRLC SFHLEMNAAT NVRDKEFLQT FKTCMFMNST TINFETRWAG 420 VVRRFRLQNN EWVKKMYRKR ELWAMAFLRG NFFGGVRSTQ RCEKMHQVLK LHLTPKLKFF 480 ECFQTYDLAV GRLRHEERRQ RAVTEHTTLL GAT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-69 | FAR1 family protein |