PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027172167.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 284aa MW: 31009.4 Da PI: 9.3845 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 104.3 | 1.1e-32 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCa+Ck++r+kC+++C+lap fp e++++f++vhk+FG+snv k+l++ +eeer++a++sl++eA a++rdP++G g ++++ ++l+ k++ XP_027172167.1 9 ACASCKHQRKKCTDKCILAPFFPVEKNREFQAVHKIFGVSNVAKILRSHnSEEERKRAADSLIWEAFAWQRDPIQGPSGEFRRVVEELKFYKTQY 103 7*********************************************99846666**************************************999 PP DUF260 95 allkee 100 +++ ++ XP_027172167.1 104 QKITSQ 109 988766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence |
MQRSTGLPAC ASCKHQRKKC TDKCILAPFF PVEKNREFQA VHKIFGVSNV AKILRSHNSE 60 EERKRAADSL IWEAFAWQRD PIQGPSGEFR RVVEELKFYK TQYQKITSQL PPTSQVTTSM 120 GYKPAVNAAV ASPVLVNGAW NNARNNNANI NGGISTMMNN IRGLSSNGGG LSGVHDHPNG 180 NSIIDHSSNP FAYGANSNHL VVQTMEHQNG SAAVILSQQH PNGNSNGVLQ GFEHQNGTAA 240 VMLPQQHHTI SGFNQQYYIP TGQYNSSTDV NGKTAESSPW HGNS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06280.1 | 6e-39 | LBD family protein |