PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027172090.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB
Protein Properties Length: 258aa    MW: 29758.8 Da    PI: 4.8805
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027172090.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.4e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +v+++G  +W+  ++  g  R++k+c++rw +yl
   XP_027172090.1 14 KGAWSEEEDNKLRAYVQRYGHWNWRQLPKFAGVARCGKSCRLRWMNYL 61
                     79******************99**********99************97 PP
2Myb_DNA-binding51.42.4e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ + + +lG++ W++Ia++++ gRt++++k++w++
   XP_027172090.1  67 RGKYTKEEEDLIREWHDKLGNK-WSAIAAKLP-GRTDNEIKNYWHT 110
                      89********************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    
MGRISFTDEN GMKKGAWSEE EDNKLRAYVQ RYGHWNWRQL PKFAGVARCG KSCRLRWMNY  60
LRPGLKRGKY TKEEEDLIRE WHDKLGNKWS AIAAKLPGRT DNEIKNYWHT QLKKRMKKIP  120
PTKNPAGMPT EDSCKSEANQ EGQPDISHQE ELPQENVGPE ASVLQSSERI ETSITQSSSE  180
MSSSNSNWVP EDGISSWDQS FAEVESFWSE PFVLDTSYNQ NNCDLSPLFG DQEGVFASYS  240
SCLDDNNDFL YQWIEDHP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.12e-53MYB family protein