PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172086.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 468aa MW: 51074.4 Da PI: 4.6418

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172086.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.2	2.5e-15	3	50	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++v++ G g+W+++ r g+ R++k+c++rw ++l XP_027172086.1 3 KGPWTANEDALLMEYVRKNGEGNWNAVQRNSGLMRCGKSCRLRWSNHL 50 79*******************************************996 PP
2	Myb_DNA-binding	49.2	1.3e-15	56	99	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T++E+ l+v++++++G++ W++ a+ ++ gRt++++k++w++ XP_027172086.1 56 KGAFTQDEEALIVNLHAKFGNK-WARMASQLP-GRTDNEIKNYWNT 99 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MKKGPWTANE DALLMEYVRK NGEGNWNAVQ RNSGLMRCGK SCRLRWSNHL RPNLKKGAFT 60 QDEEALIVNL HAKFGNKWAR MASQLPGRTD NEIKNYWNTR LKRRQRAGLP LYPVDIQPLN 120 QYQPQNLQPS PSLVSFITAV DGKPKHSTPI SIFDMFNPTT PPASTSQNQP MPSFLSDPSP 180 NFKPAQNKNG IALSLSSVNS LLSLTSASSA FNNQGPSPLG ASLPMPSLQF NCLNFGIANT 240 VPVSHASFAQ NDTGSGSNMG LPAIQSLVPE TTSSGSDYMI ATSSDADDRD EGHDHQGLSH 300 GNSGLLEDVI DESQALTRAE KPKETCLDAE KSQGEFLWDY KLMEDVGGNV CEEPGLNAIL 360 DEPYKDSTPT HSSSGVETTN ASSQKSNPVE DDLFNLLDDI PLPVTMPDWY DGNGNDIDGQ 420 CSNWIGGDAG KENHQPEPSY SPVATTPEIT DNNWTDGASY WKNLPGIY

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MKKGPWTANE DALLMEYVRK NGEGNWNAVQ RNSGLMRCGK SCRLRWSNHL RPNLKKGAFT  60
QDEEALIVNL HAKFGNKWAR MASQLPGRTD NEIKNYWNTR LKRRQRAGLP LYPVDIQPLN  120
QYQPQNLQPS PSLVSFITAV DGKPKHSTPI SIFDMFNPTT PPASTSQNQP MPSFLSDPSP  180
NFKPAQNKNG IALSLSSVNS LLSLTSASSA FNNQGPSPLG ASLPMPSLQF NCLNFGIANT  240
VPVSHASFAQ NDTGSGSNMG LPAIQSLVPE TTSSGSDYMI ATSSDADDRD EGHDHQGLSH  300
GNSGLLEDVI DESQALTRAE KPKETCLDAE KSQGEFLWDY KLMEDVGGNV CEEPGLNAIL  360
DEPYKDSTPT HSSSGVETTN ASSQKSNPVE DDLFNLLDDI PLPVTMPDWY DGNGNDIDGQ  420
CSNWIGGDAG KENHQPEPSY SPVATTPEIT DNNWTDGASY WKNLPGIY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	2e-68	MYB family protein