PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027172016.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 825aa MW: 95649.1 Da PI: 8.7219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027172016.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.5e-20	88	178	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027172016.1 88 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 178 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 825 aa Download sequence
MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLNQEP ECDRDTFIEE SGGSIGGHED 60 EEADELVGAI GVDDVMKLTF DTEEEAGEFY NLYAKLSGFG IRKSNAKRDA DGISRFRKWV 120 CCCEGYRNEK WFNYEDRKRE AKPITRTGCG ACFRVKYDIE SVKYVVTRFI MEHNHPLASE 180 ASVQHIRSHR KVSDAEYAQA KSLKLVGARI CQIMKHFVIK AGGYSNVGFC IKDLYNRMDE 240 ERRKDIFNGD AEGALGFLAA KKDADDMFFY KYHVDNEGRL AMLFWADSKS RADFSVFGDV 300 LVFDATYKTN KYRKPLVVLA GVNNHLNSTV FGCALLSDER IETYEWVLST FVEAMKGRKP 360 VAVMTDGDSA MRRAIKNLLP DTCHRLCSWH LHRNARSNIR CEEFNNRFYN LMARKCSTLE 420 FEDRWARLVN ECGVVENEWV KKLYRRRRLW AEAYLRGHFF AGMRSTQRCE KMNAFLNEYL 480 NEKMRLYEFV RSFDLAIAWL RHTESKAVHT SENTKPVLTT ILPELEGSAA EVFTRNVFFM 540 VRKHLNRQGL LISEGWSEDG GNRTYYYSKY GGHEISWRVD YDRSMEKLIC SCMKFESKGI 600 PCAHMFRVMV VEGMNRIPEA CISKRWTKGV HCSNNGMKEF VADEQLTQMA RYGTLKSSCN 660 TMCYYASYMD DAFNDLQQMF DKHSVDLKEK WIDRGYGGDG FAMDSRVRND RSRRTFGLLD 720 PRVSRCKGDH KHAEAKKKRK CGHCRQATTN EHAHTKRIRT TQQLMMIIWK TVWMTRWKNH 780 LKLVRAAATQ ANGEDKHLYH NHSVAVEGTQ VANKEVQEKD EALLL

Sequence ? help Back to Top

Protein Sequence Length: 825 aa Download sequence

MGQDGALKTQ LMTWCRKQRI NQMALDVCGR LRSFDLNQEP ECDRDTFIEE SGGSIGGHED  60
EEADELVGAI GVDDVMKLTF DTEEEAGEFY NLYAKLSGFG IRKSNAKRDA DGISRFRKWV  120
CCCEGYRNEK WFNYEDRKRE AKPITRTGCG ACFRVKYDIE SVKYVVTRFI MEHNHPLASE  180
ASVQHIRSHR KVSDAEYAQA KSLKLVGARI CQIMKHFVIK AGGYSNVGFC IKDLYNRMDE  240
ERRKDIFNGD AEGALGFLAA KKDADDMFFY KYHVDNEGRL AMLFWADSKS RADFSVFGDV  300
LVFDATYKTN KYRKPLVVLA GVNNHLNSTV FGCALLSDER IETYEWVLST FVEAMKGRKP  360
VAVMTDGDSA MRRAIKNLLP DTCHRLCSWH LHRNARSNIR CEEFNNRFYN LMARKCSTLE  420
FEDRWARLVN ECGVVENEWV KKLYRRRRLW AEAYLRGHFF AGMRSTQRCE KMNAFLNEYL  480
NEKMRLYEFV RSFDLAIAWL RHTESKAVHT SENTKPVLTT ILPELEGSAA EVFTRNVFFM  540
VRKHLNRQGL LISEGWSEDG GNRTYYYSKY GGHEISWRVD YDRSMEKLIC SCMKFESKGI  600
PCAHMFRVMV VEGMNRIPEA CISKRWTKGV HCSNNGMKEF VADEQLTQMA RYGTLKSSCN  660
TMCYYASYMD DAFNDLQQMF DKHSVDLKEK WIDRGYGGDG FAMDSRVRND RSRRTFGLLD  720
PRVSRCKGDH KHAEAKKKRK CGHCRQATTN EHAHTKRIRT TQQLMMIIWK TVWMTRWKNH  780
LKLVRAAATQ ANGEDKHLYH NHSVAVEGTQ VANKEVQEKD EALLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	444	449	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-97	FAR1 family protein