PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027171700.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 925aa MW: 106019 Da PI: 8.0219

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027171700.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.5	2.9e-20	191	281	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YAk GF +rks+ k+ +g r++vC +eg+r+e+ + ++++r+ ++ trtgC a+++vk + + k++vt++ eHnH+la XP_027171700.1 191 EFYNLYAKLSGFGIRKSNAKRD-ADGISRFRKWVCCCEGYRNEKWFNyEDRKREAKPITRTGCGACFRVKYDIeSVKYVVTRFIMEHNHPLA 281 6**************98887.8998999********9988867889999************98899************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence
MDTKIGALDT CKPLSNDVCC LPTNGAVTIH QSPIPFNSAD STLGRHLARR LVQVGVNDVF 60 CLRAQAVTVD TSEEGPCEAV VTDCSGVEQK QRNQSHTYKN CVYECESNVY RVHFVKVVRK 120 QRINQMALDV CGRLRSFDLN QEPECDRDTF IEESGGSIGG HEDEEADELV GAIGVDDVMK 180 LTFDTEEEAG EFYNLYAKLS GFGIRKSNAK RDADGISRFR KWVCCCEGYR NEKWFNYEDR 240 KREAKPITRT GCGACFRVKY DIESVKYVVT RFIMEHNHPL ASEASVQHIR SHRKVSDAEY 300 AQAKSLKLVG ARICQIMKHF VIKAGGYSNV GFCIKDLYNR MDEERRKDIF NGDAEGALGF 360 LAAKKDADDM FFYKYHVDDE GRLAMLFWAD SKSRADFSVF GDVLVFDTTY KTNKYRKPLV 420 VLAGVNNHLN STVFGCALLS DERIETYEWV LSTFVEAMKG RKPVAVMTDG DSAMRRAIKN 480 LLPDACHRLC SWHLHRNARS NIRCEEFNNR FYNLMARKCS TLEFEDRWAR LVNECGVVEN 540 EWVKKLYRRR RLWAEAYLRG HFFAGMRSTQ RCEKMNAFLN EYLNEKMRLY EFVRSFDLAI 600 AWLRHTESKA VHTSENTKPV LTTILPELEG SAAEVFTRNV FFMVRKHLNR QGLLISEGWS 660 EDGGNRTYYY SKYGGHEISW RVDYDRSMEK LICSCMKFES KGIPCAHMFR VMVVEGMNRI 720 PEACISKRWT KGVHCSNNGM KEFVADEQLT QMARYGTLKS SCNTMCYYAS YMDDAFNDLQ 780 QMFDKHSVDL KEKWIDRGYG GDGFAMDSRV RNDRSRRTFG LLDPRVSRCK GDHKHAEAKK 840 KRKCGHCRLQ AGHNQRTCPY KKNSHNTAVD DDYMENCLDD SLEKSFEIGT GCSDSGEWRG 900 QAFVPQPFGS GGRDTGGQQR SPGER

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence

MDTKIGALDT CKPLSNDVCC LPTNGAVTIH QSPIPFNSAD STLGRHLARR LVQVGVNDVF  60
CLRAQAVTVD TSEEGPCEAV VTDCSGVEQK QRNQSHTYKN CVYECESNVY RVHFVKVVRK  120
QRINQMALDV CGRLRSFDLN QEPECDRDTF IEESGGSIGG HEDEEADELV GAIGVDDVMK  180
LTFDTEEEAG EFYNLYAKLS GFGIRKSNAK RDADGISRFR KWVCCCEGYR NEKWFNYEDR  240
KREAKPITRT GCGACFRVKY DIESVKYVVT RFIMEHNHPL ASEASVQHIR SHRKVSDAEY  300
AQAKSLKLVG ARICQIMKHF VIKAGGYSNV GFCIKDLYNR MDEERRKDIF NGDAEGALGF  360
LAAKKDADDM FFYKYHVDDE GRLAMLFWAD SKSRADFSVF GDVLVFDTTY KTNKYRKPLV  420
VLAGVNNHLN STVFGCALLS DERIETYEWV LSTFVEAMKG RKPVAVMTDG DSAMRRAIKN  480
LLPDACHRLC SWHLHRNARS NIRCEEFNNR FYNLMARKCS TLEFEDRWAR LVNECGVVEN  540
EWVKKLYRRR RLWAEAYLRG HFFAGMRSTQ RCEKMNAFLN EYLNEKMRLY EFVRSFDLAI  600
AWLRHTESKA VHTSENTKPV LTTILPELEG SAAEVFTRNV FFMVRKHLNR QGLLISEGWS  660
EDGGNRTYYY SKYGGHEISW RVDYDRSMEK LICSCMKFES KGIPCAHMFR VMVVEGMNRI  720
PEACISKRWT KGVHCSNNGM KEFVADEQLT QMARYGTLKS SCNTMCYYAS YMDDAFNDLQ  780
QMFDKHSVDL KEKWIDRGYG GDGFAMDSRV RNDRSRRTFG LLDPRVSRCK GDHKHAEAKK  840
KRKCGHCRLQ AGHNQRTCPY KKNSHNTAVD DDYMENCLDD SLEKSFEIGT GCSDSGEWRG  900
QAFVPQPFGS GGRDTGGQQR SPGER

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	547	552	YRRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-97	FAR1 family protein