PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171503.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 340aa    MW: 38956.2 Da    PI: 7.4052
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171503.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS97.22.4e-30144320125312
            GRAS 125 WpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218
                     W  +++a+a R e p   l+iT+vg      ++++e+t ++L++fA+++++pf+f+v+     +dl+ e ++++ +Ea+a+ l++ql +ll+ + 
  XP_027171503.1 144 WTLIMEAFAVRHECPLeLLKITAVGT----YEKTMEKTSKQLSSFAQTINLPFSFKVV----ASDLKEEFFDLEADEAVAIALAYQLWSLLAWPN 230
                     9999*******96655499*******....99*************************6....66788889999******************6666 PP

            GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312
                     +le     ++ ++++l+P  +v+ e e+ +n+++Flerf e+l + s l  s+++ + ++ + r+ vE++   + i+nv+++eg+er+ rh ++
  XP_027171503.1 231 HLEA----LMAVIQNLKPCFLVLKEVEVCTNAPTFLERFKETLLFISGLIYSTNSCMEKHIRYRKLVEEVHWWEMIRNVLTAEGTERTLRHDKM 320
                     6666....************************************************99999******************************875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MDSCLVTTSY LLQLSCYSEE EVESPFSSLT LVELLKPRGT KLKRLRDSQM LLEESPDIPN  60
NSCSFQSSPT DKIMKFEKAR LVQLKSKKAD VSPVKLLNMC DVLASKTGNS VQRVVYYLAK  120
ALNERIDQEW GIISSDKLKR SRMWTLIMEA FAVRHECPLE LLKITAVGTY EKTMEKTSKQ  180
LSSFAQTINL PFSFKVVASD LKEEFFDLEA DEAVAIALAY QLWSLLAWPN HLEALMAVIQ  240
NLKPCFLVLK EVEVCTNAPT FLERFKETLL FISGLIYSTN SCMEKHIRYR KLVEEVHWWE  300
MIRNVLTAEG TERTLRHDKM VSGDSFSKSS VLWNQISAKH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-20GRAS family protein