PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027171462.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 872aa    MW: 94756 Da    PI: 6.4801
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027171462.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.38.9e-1265158702374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeav++++le+a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y++lp+ + s    ++ ++a+++f+ +sP++kfsh+
  XP_027171462.1 515 LTLLLQCAEAVAADNLEEANNMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYASLPAVPHS----QKMVSAFQVFNGISPFIKFSHF 605
                     579*************************************************************99996....89999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+++eervHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fAe+lg+pfefn+ va+++ +l++
  XP_027171462.1 606 TANQAIQEAFDREERVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRMTGLGT----SMEALEATGKRLSDFAEKLGLPFEFNA-VADKVGNLDP 695
                     *****************************************************....***************************.8********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                      +L+v+++Ea+aV++    h l+d s+s +s    +L+l+++l Pkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE
  XP_027171462.1 696 GRLKVSKREAVAVHWLQ--HCLYDVSGSDNS----TLRLLQRLAPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVE 783
                     ****************9..889988999888....**********************.899********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a  g +r     ++++Wr++l ++GFk ++l+ +aa+qa lll +++sdgy++ e++g+l lgW+d  L+++SaWr
  XP_027171462.1 784 QQLLSREIRNVLAFGGPSRSS-GDKFNNWRQKLLQSGFKGISLGGNAAAQATLLLGMFPSDGYTLVEDNGTLKLGWRDLCLLTASAWR 870
                     *****************9655.566**************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 872 aa     Download sequence    
LSLCFLSHQS KLQPCYCHRQ SLYLSGHSHM AKAFSLVNDS GRRGNSSLNN CSDDSPLPIS  60
SNKDFNVPLH SSLNLHSGKM ARKRAASDIE IQPVQRFLRR TASPTTTADI IPLDEFGVCS  120
INIVDTNTGV INNPNQHQHP DDVPTYSTTI VLPSCTDLSV TTSSAGGTGS ESAFSTSSSS  180
NMMGSLSPAP LPHNLIHHRQ RPQTPTQTPS ICVFSGLPLF PPDRNKYAAA GGAEQLLPSS  240
TSTSSNTAAG IDGAMLFTME DNTTAAAWID SIIKDLIHNS ANVSIPQLIQ NVREIIHPCN  300
PNLAALIEYR LRSLTSSAGA ADTPNPDNYH PERRRRESIS VPPNVQRQED YFHLQGQGHG  360
QLLAGSSGLK LYLDEDNLFS HTNTHSPLIQ DQYLNWGFAL PRTASTAVGG NSQQQQPMRN  420
NDPTAAAATG VSYVSSATVT NLANQVHHRS QQQQQSSEPE ETQTPQPSEQ QHRDSPPPPD  480
ADAAAAVTAA SSASRSLRNE EIRQQKRDEQ GLHLLTLLLQ CAEAVAADNL EEANNMLLEI  540
SELSTPFGTS AQRVAAYFSE AMSARLVSSC LGIYASLPAV PHSQKMVSAF QVFNGISPFI  600
KFSHFTANQA IQEAFDREER VHIIDLDIMQ GLQWPGLFHI LASRPGGPPF VRMTGLGTSM  660
EALEATGKRL SDFAEKLGLP FEFNAVADKV GNLDPGRLKV SKREAVAVHW LQHCLYDVSG  720
SDNSTLRLLQ RLAPKVVTVV EQDLSHAGSF LGRFVEAIHY YSALFDSLGA CYGEESEERH  780
VVEQQLLSRE IRNVLAFGGP SRSSGDKFNN WRQKLLQSGF KGISLGGNAA AQATLLLGMF  840
PSDGYTLVED NGTLKLGWRD LCLLTASAWR PS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein