PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_027170061.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 478aa MW: 53915.9 Da PI: 8.3629 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4.1e-08 | 402 | 456 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 ++WT E+e l+++v+++ ++ W++I + Rt+ ++k++w++ XP_027170061.1 402 LPWTDAEEEMLKEGVEKFSTDrnkniPWRKILEFGRhvfdGSRTPVDLKDKWRNI 456 69******************************998899***************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 478 aa Download sequence |
MGWSEKDLCI KCDKGGKVLV CRDSRCPIVV HEKCLGFPAK FDEMGRFYCP YCVYRRAIEE 60 AHQAREKALS KKKALSKFLD TKMTNAEWQT QKTEISKGKE LSQLPGVDST GSLNSGSRPD 120 KINVHNHTAR LVEDQNEGRF APECSRLVLL SKETGESIRG DQNDVLCSNT SDIGGSSDCN 180 CRIVVVGHRT ESGPIVASGN ECVSSDREET IKRFEMVEIG NKVQLHSQWQ QDDFRGKVVD 240 DQLDDKNLRE SPAVENHGME NHLSPEAKRV GRDGDMLREY DGRLVGEEVE KEKVLESPAI 300 SPSHPALEMH LQEKRAGQTS DSICKDSNAA STGKASKQND KRKEQNAEAT CFRKLSQNSA 360 SHHRASLDQF EKIHACSKLR KLNKPAPQCS MILCPNARRK SLPWTDAEEE MLKEGVEKFS 420 TDRNKNIPWR KILEFGRHVF DGSRTPVDLK DKWRNILAKK QRGINRNSSC FLFTILAR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53790.1 | 2e-06 | MYB_related family protein |