PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027169691.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family MYB_related
Protein Properties Length: 359aa    MW: 39607.6 Da    PI: 6.2911
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027169691.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.18.2e-1371113246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++T+eE++l++++++  G++ W  Ia+ ++ gRt++++k+ w++
   XP_027169691.1  71 GSFTPEEEDLIIKLHAAIGSR-WPIIAQQLP-GRTDNDVKNVWNT 113
                      79*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MVKPPYCDKI KMQMKEVHLT EEEDAKAHAY APKQGTGNWA AAMPKKSGAR RCGKSCRIRW  60
SGNQRPDPGH GSFTPEEEDL IIKLHAAIGS RWPIIAQQLP GRTDNDVKNV WNTKLKKKLS  120
AIGIDPVTHR PFSQILADYG NLGGFPKARN RSGCLSRDIK NAFVLKSEQS RGLPERSSHF  180
DSHFGTTISP LAVEPSKHHF MSNCSHISAA RNQSLELLSQ LQAITMVTEA STYTNTAAQI  240
PAECYSSSAS SSPESPPSAT NQAVASPSFS WCDFLLEDAF VPTTYTEERE NEMKLPLSYD  300
PKSKEMKLSV AAEEEEVDIS AKTVEASAIS CGSFVEAMLE GENEMLSDFH GLLEDPFYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-56MYB family protein