PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169550.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

FAR1

Protein Properties

Length: 673aa MW: 78580.4 Da PI: 8.5766

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169550.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.9	1.4e-22	26	113	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++GFsvrk++ +k ++ +t+r+++C keg +++ k + + +rtr+ t+ gC ak+++ + + + k++v++l+l+HnHel XP_027169550.1 26 KFYNKYAFKMGFSVRKDYLNKD-KDSVTTSRRYNCCKEGVKRKYKGD-VMPKRTRTPTKAGCGAKMVIVLLRgTMKYHVHDLVLKHNHEL 113 6****************999.6777************9999.9999************99998**************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MDCSKLAEDG TPELGMEFNS EDDAYKFYNK YAFKMGFSVR KDYLNKDKDS VTTSRRYNCC 60 KEGVKRKYKG DVMPKRTRTP TKAGCGAKMV IVLLRGTMKY HVHDLVLKHN HELHIVQCSH 120 MMPSQRKVSE AQRFQTEISE DAGLSLKQSH ELMGKEAGGM ENMGYTREDL KRYLRTRRET 180 SVKYREAGSK LNYFQEQTLE NPSFFHTVQL DCEEQITNIF WVNAGMLIDY NFFGDVITFD 240 TTYKTNKEYR PLGVFVSFNQ HRQIVIFGAA FMYDETIDSF KWVFGTFLEA MCGKRPSTIL 300 TDQDHAMVAA LSVVMPETFH GLCTFHIKHS FMKHLGNHYK KNSDLLYMLG ACMYEFEEVE 360 QFNRVWEAMV KKHNLENNEW FSGLYRIRDK WARCIMKERW TVGMRNTQLS ESLNAAIKIH 420 LKLDHDLVQF FRHFNQVVDE KRHNELIAEY EMRQKLPMVG LRQTSMLVHA SEMYSPTVFV 480 AFQNEYGKST AMVILRQQDA GMFVEFAVMR YDRRPERIVV FNRNDLNVRC SCKKYENEGI 540 LCGHVLKVFD TVGIKIISPE YVKRRWTKRA WAGDCFDWRG TEIVVDPKVI ISTRYRELSP 600 AMIKVATQAA MSEDTSKVVI TVISDLTKRV ELLLSESEEQ PLQKQKNLNM EERDKIEIVN 660 EMGEAVVTRG IKK

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MDCSKLAEDG TPELGMEFNS EDDAYKFYNK YAFKMGFSVR KDYLNKDKDS VTTSRRYNCC  60
KEGVKRKYKG DVMPKRTRTP TKAGCGAKMV IVLLRGTMKY HVHDLVLKHN HELHIVQCSH  120
MMPSQRKVSE AQRFQTEISE DAGLSLKQSH ELMGKEAGGM ENMGYTREDL KRYLRTRRET  180
SVKYREAGSK LNYFQEQTLE NPSFFHTVQL DCEEQITNIF WVNAGMLIDY NFFGDVITFD  240
TTYKTNKEYR PLGVFVSFNQ HRQIVIFGAA FMYDETIDSF KWVFGTFLEA MCGKRPSTIL  300
TDQDHAMVAA LSVVMPETFH GLCTFHIKHS FMKHLGNHYK KNSDLLYMLG ACMYEFEEVE  360
QFNRVWEAMV KKHNLENNEW FSGLYRIRDK WARCIMKERW TVGMRNTQLS ESLNAAIKIH  420
LKLDHDLVQF FRHFNQVVDE KRHNELIAEY EMRQKLPMVG LRQTSMLVHA SEMYSPTVFV  480
AFQNEYGKST AMVILRQQDA GMFVEFAVMR YDRRPERIVV FNRNDLNVRC SCKKYENEGI  540
LCGHVLKVFD TVGIKIISPE YVKRRWTKRA WAGDCFDWRG TEIVVDPKVI ISTRYRELSP  600
AMIKVATQAA MSEDTSKVVI TVISDLTKRV ELLLSESEEQ PLQKQKNLNM EERDKIEIVN  660
EMGEAVVTRG IKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-100	FAR1 family protein