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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027169538.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | FAR1 | ||||||||
Protein Properties | Length: 116aa MW: 13767.8 Da PI: 8.3039 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.7e-17 | 26 | 113 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfYn+YA ++ F+v+k++ +k ++g +t+r++ keg +++ + + + ++tr+ t+tgC k+ + + + k++v++l leHnH l XP_027169538.1 26 KFYNNYAFKTDFNVCKDYLNKD-KDGVTTSRRYSYCKEGVKRKYEGD-VMPKKTRTPTKTGCGTKMIIVLLReIMKYRVHDLILEHNHVL 113 6******************998.788899999988888888888888.8999************9998877769**************88 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence |
MDCNKLVEDR TPELEMEFNS EEDAYKFYNN YAFKTDFNVC KDYLNKDKDG VTTSRRYSYC 60 KEGVKRKYEG DVMPKKTRTP TKTGCGTKMI IVLLREIMKY RVHDLILEHN HVLHIA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 2e-10 | FAR1 family protein |