PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027169263.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 715aa    MW: 78429.3 Da    PI: 6.7331
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027169263.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-202580156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_027169263.1 25 KKRYHRHTAHQIQRLESMFKECPHPDEKTRLQLSRELGLAPRQIKFWFQNRRTQMK 80
                    678899***********************************************998 PP
2START176.61.5e-552234472206
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a  a++el+++ + +ep+W+ks+    e +n + + ++f+++++       ++ea+r+sgvv+m+   lv  ++d + +W e ++    +a tl
  XP_027169263.1 223 IAGNAMDELIRLLQTNEPLWMKSPvdgrEVLNLESYERIFPRANThlrspnIRIEASRDSGVVIMNGLALVDMFMDAN-KWVELFPtivsRARTL 316
                     67899**********************999************999*****99**************************.******99999***** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     evissg      g+lqlm+ elq+lsp vp R  +f+R+++q ++g+w+ivdvS d +q+++  +s  + ++lpSg+li++++ng+skvtwveh 
  XP_027169263.1 317 EVISSGilgsqsGTLQLMYEELQVLSPFVPpRQLYFLRFCQQIEQGSWAIVDVSYDIPQENQ-FASPCKTHRLPSGCLIQDMPNGYSKVTWVEHL 410
                     *************************************************************9.79999*************************** PP

                     E--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     + +++ p h l+  l++sgla+ga +w+atlqr ce+
  XP_027169263.1 411 EIEEKAPvHRLFGDLIHSGLAFGAERWLATLQRMCER 447
                     ***********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    
MDYASGGGGS GGDHHHHHDA SDRRKKRYHR HTAHQIQRLE SMFKECPHPD EKTRLQLSRE  60
LGLAPRQIKF WFQNRRTQMK AQHERADNCA LRAENDKIRC ENIAIREALK NVICPSCGGP  120
PVGEDSYFDE QKLQMENAQL KEELDRVSSI AAKYIGRPIS QLPPVQPIHI SSLDLSMSSF  180
GGGGMVGPSL DLDLLPGSSS TMPGLPFPAM SISDMDKSLM ADIAGNAMDE LIRLLQTNEP  240
LWMKSPVDGR EVLNLESYER IFPRANTHLR SPNIRIEASR DSGVVIMNGL ALVDMFMDAN  300
KWVELFPTIV SRARTLEVIS SGILGSQSGT LQLMYEELQV LSPFVPPRQL YFLRFCQQIE  360
QGSWAIVDVS YDIPQENQFA SPCKTHRLPS GCLIQDMPNG YSKVTWVEHL EIEEKAPVHR  420
LFGDLIHSGL AFGAERWLAT LQRMCERFAC LMVTGNSTRD LGGVIPSAEG KRSMMKLAQR  480
MVSSFCQSIN PSNGHQWTTL SGLNEFEVRA TLHKSTDPGQ PNGVVLSAAT TIWLPIPPQN  540
VFNFFRDERT RHQWDVLSNQ APVQEVAHIA NGSHPGNCIS VLRAFNTNQN NMLILQESCI  600
DASGSLVVFG PVDLPAINIA MSGEDPSYIP LLPSGFTITP DGRPVMGSGG GGSSSGVGGR  660
SGGAGGSLIT VVFQILVSSL PSAKMSPESV NTVNNLIGTT VHQIKAALNC STTTS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein