PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169111.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 571aa MW: 62377.2 Da PI: 6.8026

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	57.8	2e-18	270	319	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f++Lre++P++ ++K +Ka+ L +++eYI+ Lq XP_027169111.1 270 RSKHSATEQRRRSKINDRFQKLREIIPHS----DQKRDKASFLLEVIEYIQFLQ 319 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence
MELRQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGFLK TQDFLQPLEQ GCKNDAKEED 60 KVEINDLEKP PPAASPSNIE HLLPGGIGTY SITYFNQRFL KPEGNVYMMA QASSTNINDE 120 NSNCSSYAGG GFTLWDESAV KKGKTGKENN AGDRAVLKEA EANVGAGQWR ASAERPSQSS 180 SNHKLNAATF SSLSTSKPSL AQRNQSFVNM ITSAKSFQEE DDDDDDEEEF VIKKEPSSHP 240 KGTQITSILT GNLSVKVDGK STDQKPSTPR SKHSATEQRR RSKINDRFQK LREIIPHSDQ 300 KRDKASFLLE VIEYIQFLQD KVQKYEGPYP GWNQELSKPM PWRNLRGPED FINSTQVTNI 360 GSNPLIHAAK LNESKVTSSS ALAINGQHLE SDVSSAAAFG EKDHQPDITD KAASVPMALR 420 HGIFPFGGTS TASVPLSSTP ASDIDKTASH PQHQFWPRGS CTADSNITDK LKDQELTIES 480 GTISISSIYS QGLLSTLTQA LQSSGIDLSQ ANISVQIDLG KRANGRVNSS ASVIKDVDVP 540 SCNQAMPRSI VTRAGEDSPG QALKRLKTSR S

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence

MELRQPRPFG TEGRKTTHDF LSLYSPVQQD PRPPQGGFLK TQDFLQPLEQ GCKNDAKEED  60
KVEINDLEKP PPAASPSNIE HLLPGGIGTY SITYFNQRFL KPEGNVYMMA QASSTNINDE  120
NSNCSSYAGG GFTLWDESAV KKGKTGKENN AGDRAVLKEA EANVGAGQWR ASAERPSQSS  180
SNHKLNAATF SSLSTSKPSL AQRNQSFVNM ITSAKSFQEE DDDDDDEEEF VIKKEPSSHP  240
KGTQITSILT GNLSVKVDGK STDQKPSTPR SKHSATEQRR RSKINDRFQK LREIIPHSDQ  300
KRDKASFLLE VIEYIQFLQD KVQKYEGPYP GWNQELSKPM PWRNLRGPED FINSTQVTNI  360
GSNPLIHAAK LNESKVTSSS ALAINGQHLE SDVSSAAAFG EKDHQPDITD KAASVPMALR  420
HGIFPFGGTS TASVPLSSTP ASDIDKTASH PQHQFWPRGS CTADSNITDK LKDQELTIES  480
GTISISSIYS QGLLSTLTQA LQSSGIDLSQ ANISVQIDLG KRANGRVNSS ASVIKDVDVP  540
SCNQAMPRSI VTRAGEDSPG QALKRLKTSR S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.2	7e-88	bHLH family protein