PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027169095.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

Nin-like

Protein Properties

Length: 515aa MW: 57884.1 Da PI: 5.3756

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027169095.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	52.1	1.3e-16	330	374	3	47
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhR 47 ++++ e+++k+F l++kdAA +L+v++++LKr+CR++GI+ WP+ XP_027169095.1 330 DKLDREKVEKHFGLKLKDAAESLQVSPSTLKRKCRKLGIPSWPRK 374 578999*************************************75 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MDSDLEKSST DISHALCDIH KALVEACQTH KLPVAQTWMP QLGKCQSYTD NALSTTSNEY 60 YLEHAGFSLF RDICESFQLL RGQGVVWQAF SSGTPCFCGD MTKLSIAEYS FAHIGKKVLL 120 DSSLAICLKS DHTGDHVYVL ELFLPFRTAD PTKLLEAVLL TMKKHLNSFR LASGPTLGDE 180 MFVEVFRVSK EDKLEFFTLF HTTGGSDGLQ NQQLFPQKNW EFSDVDYAKI LVDEGSWWDQ 240 VISYVDYAPV SITRRGTSDD VFGWKEDSCD TPSVKEGNSY INSAASTSRY PEQDNLARLV 300 AKDAQFSAFP NLDVDFWHNK EGISSASDLD KLDREKVEKH FGLKLKDAAE SLQVSPSTLK 360 RKCRKLGIPS WPRKRNQGTC FATSTESNKD REIRNAEYGQ EVSHPNVSSQ EGTTSSKHNS 420 SQAATIAKDS FMMIKAAYGE IKKIKFPLPF SSPLVDLEME AASRLELKVG NFKLWYLDED 480 DDWILITRDA DLRTMESMGK NTIKVSITHG DDSPY

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MDSDLEKSST DISHALCDIH KALVEACQTH KLPVAQTWMP QLGKCQSYTD NALSTTSNEY  60
YLEHAGFSLF RDICESFQLL RGQGVVWQAF SSGTPCFCGD MTKLSIAEYS FAHIGKKVLL  120
DSSLAICLKS DHTGDHVYVL ELFLPFRTAD PTKLLEAVLL TMKKHLNSFR LASGPTLGDE  180
MFVEVFRVSK EDKLEFFTLF HTTGGSDGLQ NQQLFPQKNW EFSDVDYAKI LVDEGSWWDQ  240
VISYVDYAPV SITRRGTSDD VFGWKEDSCD TPSVKEGNSY INSAASTSRY PEQDNLARLV  300
AKDAQFSAFP NLDVDFWHNK EGISSASDLD KLDREKVEKH FGLKLKDAAE SLQVSPSTLK  360
RKCRKLGIPS WPRKRNQGTC FATSTESNKD REIRNAEYGQ EVSHPNVSSQ EGTTSSKHNS  420
SQAATIAKDS FMMIKAAYGE IKKIKFPLPF SSPLVDLEME AASRLELKVG NFKLWYLDED  480
DDWILITRDA DLRTMESMGK NTIKVSITHG DDSPY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	6e-30	Nin-like family protein