PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_027168672.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 273aa MW: 29322.2 Da PI: 6.834 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.8 | 1.9e-29 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l++a p++ r+ +++sl+yeA+ r+ +P+yG++g++++++++l+q+ XP_027168672.1 4 SCNGCRVLRKGCSEKCSIKPCLhwiksPEAQANATVFLAKFYGRAGLLNLINAGPDHLRPGIFRSLLYEACGRIVNPIYGSTGLLWSGNWHLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 ++e++l ++ XP_027168672.1 99 AVEAVLSGS 107 ***998766 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence |
MRMSCNGCRV LRKGCSEKCS IKPCLHWIKS PEAQANATVF LAKFYGRAGL LNLINAGPDH 60 LRPGIFRSLL YEACGRIVNP IYGSTGLLWS GNWHLCQAAV EAVLSGSPIS QVSADSAACT 120 VCPPLKAGDI RHVSKDENSA GSAARDLHKV KCSKGKFKRA GVKQPKVRVE SPDVDNAARV 180 MWSWSHKEEE EEEVVGSPSR DSGVSQHVEP PSRGGECGDA DSASVETVEE SLVKPDEPAD 240 GSDVELELTL GFEPVLCRQR KVGPLESDGG VNK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 4e-86 | LBD family protein |