PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027168643.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family C3H
Protein Properties Length: 526aa    MW: 60285.1 Da    PI: 9.2128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027168643.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.66.9e-06502524225
                     -S---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                     k  lCr++a+ G C yG +Ck+ H
  XP_027168643.1 502 KKQLCRYYAQ-GRCYYGYKCKYLH 524
                     789*******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    
MALLEQQNYN GESDHSDGYD SDDSEEDPDF DILEESRSSF SGLSIRRKSN LGIDKEMIKY  60
AEGEGDPDVT EVVVPGLDEK DQKGYETIQK VIGAGQLEKL KVDQCKVYLR KHGLRLTGNK  120
ETLIQRIREH LDILNGGGEK KYPASSFLVN CKGDACTGDI ILFKQTVYGM FNIASRSASG  180
PPCGTRLVAG RIVKESYGAA KQQHTFTIEV LWSKGEKSLP PLHPLLIKGR NLYRLTTMRQ  240
RWEDEEERKR ILSEKHARGA VARSNRETRV LERDMRKVLK SDRVLKKEHS FRKQEENRKQ  300
MQCSLSIPLN NNIQPEQQPE DMQDTCQSQH FKKKECWELR SFKDKTSARQ EDPGYVQMRS  360
KICTDANVPL EGNLSRRPFT SMNCNLPGHP SWMKTHEVQT KFKNSMTSVY GAVKNARHAN  420
HRSVINHPRA PAGCEISSTN SLSSSTKSHV YAKNENAQQK DFYHRNCGMN NPLKSSEQMR  480
AYVRVENFDA SRDIVQGHLK EKKQLCRYYA QGRCYYGYKC KYLHEV