PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_027167881.1
Organism
Coffea eugenioides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 331aa    MW: 36655.6 Da    PI: 10.3746
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_027167881.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind3182.9e-9713311301
       GAGA_bind   1 mdddgsre.rnkgyyepa..aslk..enlglqlmssiaerdaki..rernlalsekkaavaerd............................maf 60 
                     md +gs++ rn+g++ep+  ++lk   +lglqlms+++e+      re++    ++++++ ++                             +++
  XP_027167881.1   1 MDGNGSMNlRNWGFFEPTptPALKgaGHLGLQLMSTMTEKPLFGggRENH--PYQHHHPHPHQAyssimapstnggpyhhhrvggisessipVDY 93 
                     999*************776677773369*********9887655543333..3333333322223455566667777777779********9999 PP

       GAGA_bind  61 lqrdkalaernkalv..erdnk..llalllvensla....salpvgvqvlsgtksidslqqlse.pqledsavelreeeklealpieeaaeeake 146
                      +rd +l++r+k l   + ++    l+l ++++++     ++   +++vl++t+s++s+q++++ + l+++ v+ +ee      +i e++ ++  
  XP_027167881.1  94 -MRDVWLNHREKYLNalPNNQHphQLQLHPQQQNQHhsqhHHPQINYGVLPETSSAHSVQMIQQsSLLNNDDVGPQEE------EICETRGVVGA 181
                     .9*******99865411333330133333333333255534445689**************77724455555553333......45555555555 PP

       GAGA_bind 147 kkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSv 241
                     +kk+     +k+pk++kakk+kk ++ ++++++++   +r++a+kks ++ +ng+s+D+s++P+PvC+CtG  +qCY+WG+GGWqSaCCtt +Sv
  XP_027167881.1 182 VKKRG---GGKVPKSPKAKKPKKAPKPPREESSRSL--HRARAPKKSAEVIINGISMDISGIPIPVCTCTGNAQQCYRWGAGGWQSACCTTGMSV 271
                     55544...6788888888888886666655555555..79******************************************************* PP

       GAGA_bind 242 yPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                     yPLP+s+krrgaRiagrKmS gaf+k+LekLa+eG+++snp+DL++hWAkHGtnkfvtir
  XP_027167881.1 272 YPLPMSAKRRGARIAGRKMSLGAFRKVLEKLASEGFNFSNPIDLRNHWAKHGTNKFVTIR 331
                     ***********************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    
MDGNGSMNLR NWGFFEPTPT PALKGAGHLG LQLMSTMTEK PLFGGGRENH PYQHHHPHPH  60
QAYSSIMAPS TNGGPYHHHR VGGISESSIP VDYMRDVWLN HREKYLNALP NNQHPHQLQL  120
HPQQQNQHHS QHHHPQINYG VLPETSSAHS VQMIQQSSLL NNDDVGPQEE EICETRGVVG  180
AVKKRGGGKV PKSPKAKKPK KAPKPPREES SRSLHRARAP KKSAEVIING ISMDISGIPI  240
PVCTCTGNAQ QCYRWGAGGW QSACCTTGMS VYPLPMSAKR RGARIAGRKM SLGAFRKVLE  300
KLASEGFNFS NPIDLRNHWA KHGTNKFVTI R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.17e-67BBR-BPC family protein