PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167857.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

LBD

Protein Properties

Length: 304aa MW: 34702.8 Da PI: 6.1466

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167857.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.1	6.9e-39	16	115	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k+++ l++ e+++am+++++++++ra+dPv G++++i++lq+q+e +k el+ XP_027167857.1 16 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIRILDQPEKDAAMRTIIFQSDVRASDPVGGCYRIIRQLQRQIEYTKLELD 110 7******************************************************************************************9999 PP DUF260 96 llkee 100 + ++ XP_027167857.1 111 FVLHQ 115 87766 PP

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence
MHNTNVPIAR VNTTQACAAC KYQRRKCAPD CILAPYFPHD RQRQFLNAHK LFGVSNITKI 60 IRILDQPEKD AAMRTIIFQS DVRASDPVGG CYRIIRQLQR QIEYTKLELD FVLHQLALCR 120 AQAQAQAQVQ AHQHQRQQQM LVPAEDATDS TSQYCDMFGA DPLGSYEQLH INYHHLQPQP 180 PLDQYIIQND NNVALQEVAT NSWGMQGSSS SSMMPVTTKQ HSANDCNDFK PLFDGISDDP 240 HDFRFESEEP IDHRSDEQAM LKGDQAALKE DESSFHCVRD HHDLKVTMPH HYQETTISDS 300 SFLP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	4e-54	LBD family protein