PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167633.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 365aa MW: 39989.9 Da PI: 6.1814

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167633.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.9	2.1e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl XP_027167633.1 14 KGPWTPEEDIILVSYIQEHGPGNWRAVPTNTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	49.3	1.1e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_027167633.1 67 RGNFTEHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ 120 GHDDHSCQDG HSSTSHESIS KGQWERRLQT DIHMAKQALC EALSLDKTPP ASNTNIPESM 180 APSSSAPAET KPVLTLNPSF TNPPLKPSGY ASSTENIARL LQNWMKKSPK SLAVVSETCT 240 AQSLSCYSDN NPSVITGSSP SEGTASAMTP EGGLDSLLSF NSTTNSDVSQ GQSVSVEEVA 300 NFRPENTVGG LFQDDEDKPN LVVGSHQMPP LSFLEKWLLD DAGAVQGQEG IDLMDMSLGE 360 TADLF

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ EHGPGNWRAV PTNTGLLRCS KSCRLRWTNY  60
LRPGIKRGNF TEHEEKMIIH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKKLQ  120
GHDDHSCQDG HSSTSHESIS KGQWERRLQT DIHMAKQALC EALSLDKTPP ASNTNIPESM  180
APSSSAPAET KPVLTLNPSF TNPPLKPSGY ASSTENIARL LQNWMKKSPK SLAVVSETCT  240
AQSLSCYSDN NPSVITGSSP SEGTASAMTP EGGLDSLLSF NSTTNSDVSQ GQSVSVEEVA  300
NFRPENTVGG LFQDDEDKPN LVVGSHQMPP LSFLEKWLLD DAGAVQGQEG IDLMDMSLGE  360
TADLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62470.2	1e-109	MYB family protein