PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167416.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

NF-YA

Protein Properties

Length: 357aa MW: 39623.1 Da PI: 8.6485

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167416.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.8	2.8e-31	200	256	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep++VNaKQ+++I++RR++Rak+e+++kl +k+rkpylheSRh+hAl+R+RgsgGrF XP_027167416.1 200 DEPIFVNAKQFKAIMRRRESRAKQEAQNKL-SKNRKPYLHESRHRHALNRARGSGGRF 256 79**************************.************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence
MPDSITTAAT TSSIFTKSQR MQDLLKGDDL NNARMMAPCV DDSQSWWTST NSQGQQSSLS 60 RNLTFKAASP VECFQGNKQL GFHFQDQESS STQSTGQSCP EVASMENEKY RKNITSVQPG 120 WCGLHAKPEE DPSKSSVLFQ DYIFPCSSID YRQHATYPFN YTDPYNHGLV AAYGPHSVVH 180 SQMMGMTPIR VPLPLDAAQD EPIFVNAKQF KAIMRRRESR AKQEAQNKLS KNRKPYLHES 240 RHRHALNRAR GSGGRFLNTK ELQESKAVAK TNDKETSGSL QLQLNMETTE PEVCQTGNKK 300 DGISITACSD ITSASNGDDA LQRQDFRFSG YRPHVGSFVA SGGSGRTGGV QQFLSIR

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence

MPDSITTAAT TSSIFTKSQR MQDLLKGDDL NNARMMAPCV DDSQSWWTST NSQGQQSSLS  60
RNLTFKAASP VECFQGNKQL GFHFQDQESS STQSTGQSCP EVASMENEKY RKNITSVQPG  120
WCGLHAKPEE DPSKSSVLFQ DYIFPCSSID YRQHATYPFN YTDPYNHGLV AAYGPHSVVH  180
SQMMGMTPIR VPLPLDAAQD EPIFVNAKQF KAIMRRRESR AKQEAQNKLS KNRKPYLHES  240
RHRHALNRAR GSGGRFLNTK ELQESKAVAK TNDKETSGSL QLQLNMETTE PEVCQTGNKK  300
DGISITACSD ITSASNGDDA LQRQDFRFSG YRPHVGSFVA SGGSGRTGGV QQFLSIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72830.1	4e-52	NF-YA family protein