PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_027167235.1

Organism

Coffea eugenioides

Taxonomic ID

49369

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea

Family

C2H2

Protein Properties

Length: 436aa MW: 48623 Da PI: 8.7275

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_027167235.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.6	5.1e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H XP_027167235.1 56 YVCEICNQGFQRDQNLQMHRRRH 78 9*********************9 PP
2	zf-C2H2	16.1	3.2e-05	133	155	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k H++t+ XP_027167235.1 133 WVCEKCSKGYAVQSDYKAHLKTC 155 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 436 aa Download sequence
MLSSDIINHP SSSSEPFTCG ENGINSKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI 60 CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK 120 KHFRRKHSNQ KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA 180 CNLGRIRSES HSLQPAATAC LSRTASSPSP SSDTNVSASP WPVLMAKPVA MDTKFVAPTR 240 DSNKSPHNLE LQLLTTSSSS PMDMISVSKK DEDHSALLQL SIGSSDFNEK NEMESSNSEK 300 PIMDASRIKE EAREQLAVAI SEKAFAEEAR RQAKRQIELA EQEFANAKRI RQQAQAELEK 360 AQALKEQATK QINATIWQIT CQTCKEKFNA SRTARAAAHA PHHESALTLM GYISSALSDG 420 EVVKGDRLVH PKYALC

Sequence ? help Back to Top

Protein Sequence Length: 436 aa Download sequence

MLSSDIINHP SSSSEPFTCG ENGINSKRKR RPAGTPDPDA EVVSLSPKTL LESDRYVCEI  60
CNQGFQRDQN LQMHRRRHKV PWKLLKRETP VVRKRVFVCP EPSCLHHDPC HALGDLVGIK  120
KHFRRKHSNQ KQWVCEKCSK GYAVQSDYKA HLKTCGTRGH SCDCGRVFSR VESFIEHQDA  180
CNLGRIRSES HSLQPAATAC LSRTASSPSP SSDTNVSASP WPVLMAKPVA MDTKFVAPTR  240
DSNKSPHNLE LQLLTTSSSS PMDMISVSKK DEDHSALLQL SIGSSDFNEK NEMESSNSEK  300
PIMDASRIKE EAREQLAVAI SEKAFAEEAR RQAKRQIELA EQEFANAKRI RQQAQAELEK  360
AQALKEQATK QINATIWQIT CQTCKEKFNA SRTARAAAHA PHHESALTLM GYISSALSDG  420
EVVKGDRLVH PKYALC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	27	32	KRKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	1e-126	C2H2 family protein